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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAGGGAAATTTAAAGCTGGCTGATTTTGGGCTTGCACGGTCGTATTCTCATGATCATACTGGAAATCTTACAAATCGTGTCATCACATTGTGGTATAGgtaagcctaaaaatcgtcattcaaagtttacatgatatacatagatagtcttaatattatggtctttgctaattcattgttattactactttgctgatttacatatattgcggcag

Basic information

species Arabidopsis thaliana
transcript AT5G10270.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10270.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os05g32360.1 (Oryza sativa), 5'ss of exon 7
ATGAGGGAAATTTAAAGCTGGCTGATTTTGGGCTTGCACGGTCGTATTCTCATGATCATACTGGAAATCTTACAAATCGTGTCATCACATTGTGGTATAGgtaagcctaaaaatcgtcattcaaagtttacatgatatacatagatagtcttaatattatggtctttgct-aattcattgttattactactttgctgatttacatatattgcggcag
|||| || || || ||||||||||||||||| || ||| | || | |||  |||||||||  |||||||| || |||||||| ||||| |||||||| |||||   |  | |||  | |        ||  ||  |  | || |   ||  |  |||| | || ||||||    ||||  | |  | |       |||||| ||             
ATGAAGGTAACTTGAAGCTGGCTGATTTTGGCCTAGCAAGATCATTTTCAAATGATCATAACGGAAATCTCACTAATCGTGTGATCACTTTGTGGTACAGgtattgc--agaattatgaacttgccattgaattttgcatattgt--gttatggtatt-tagtttttgcttggatcatgctgaccatt-tgccaatgattttcag------------

upper sequence: AT5G10270.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv07s0141g00280.t01 (Vitis vinifera), 5'ss of exon 7
ATGAGGGAAATTTAAAGCTGGCTGATTTTGGGCTTGCACGGTCGTATTCTCATGATCATACTGGAAATCTTACAAATCGTGTCATCACATTGTGGTATAGgtaagcctaaaaatcgtcattcaaagttt-acatgatatacatagatagtctta-atattatggtctttgcta--attcattgttattactactttgctgatttacatatattgcggcag------
||||||||| ||||||||| ||||||||||| ||||||||||| | |||   ||| |||| ||||||||||||||||||||| || || |||||||||||||||      | ||   | |     |||| | |     ||  |  || ||  |  || ||      ||| | |  ||    |    ||   | || | ||||| |  | |||   |          
ATGAGGGAATTTTAAAGCTTGCTGATTTTGGACTTGCACGGTCATTTTCCAGTGACCATAATGGAAATCTTACAAATCGTGTTATTACTTTGTGGTATAGgtaaaatattacattaacctcatgtgttttaaactgcctagctcaattgttgtgcatgttgcatcttttccaagaataagctccgcttttcatttagttgattcaggtttatattgatttgcatag

upper sequence: AT5G10270.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: PP1S121_162V6.1 (Physcomitrella patens), 5'ss of exon 6
ATGAGGGAAATTTAAAGCTGGCTGATTTTGGGCTTGCACGGTCGTATTCTCATGATCATACTGGAAATC---TTACAAATCGTGTCATCACATTGTGGTATAGgtaagcc-taaaaatcgtcattcaaagtttac----atgatatacat--agatagtcttaatatta-tggtctttgctaattcatt-gttattactactttgc--tgatttacatatattgcggcag------------------------------
   | |||| ||| ||||| |||||||||||||||||| |||||| |||| ||||||| | |||  | |   | |||||  | || |||||  | ||||||||||||| | | |   |  |  ||       | |    || || |   |   |||||        ||| |  ||||||      |||  || |  | | ||      ||    ||   || |  | ||                               
---ATGGAATTTTGAAGCTTGCTGATTTTGGGCTTGCAAGGTCGTTTTCTAATGATCAGAATGGTCAACCACTGACAAACAGAGTTATCACTCTTTGGTATAGgtaaggcatcagtgttctacttttggccctgctatcattatcttggttcggataggaggggagttagttttctttgactgagcataagtgagcattgctccatagtggacgactactagtaagtcacttgactttctagtatttcttcctgtttcag