1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGGCATTGCTTCCTTCTACGAGGGTTACTATGCCAACAAAGGAATTAACATTGTCAAAGGCACTGTTGCATCTGGTTTCACTACCAACTCAAATGGAGAGgttagcaattagcatcaccgttcaaacttgacaaacagcagtttttctctccgctgcttcaacaatatctctctgttgcttaatgatgcag
species | Arabidopsis thaliana |
transcript | AT5G03630.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGTTGCATCTGGTTTCACTACCAACTCAAATGGAGAG GTCACTGAGGTGAAATTGAAAGACGGAAGAACGTTAGAAGCTGATATTGTGEST: gi|125288887|gb|EL302972.1|EL302972
genomic: TGTTGCATCTGGTTTCACTACCAACTCAAATGGAGAGgttagcaatt ... aatgatgcagGTCACTGAGGTGAAATTGAAAGACGGAAGAACGTTAGAAGCTGATATTGTG
EST: TCTGGTTTCACTACCAACTCAAATGGAGAG GTCACTGAGGTGAAATTGAAAGACGGAAGAACGTTAGAAGCTGATATTGTGEST: gi|124753762|gb|EH843892.1|EH843892
genomic: TCTGGTTTCACTACCAACTCAAATGGAGAGgttagcaatt ... aatgatgcagGTCACTGAGGTGAAATTGAAAGACGGAAGAACGTTAGAAGCTGATATTGTG
EST: TTGTCAAAGGCACTGTTGCATCTGGTTTCACTACCAACTCAAATGGAGAG GTCACTGAGGTGAAATTGAAAGACGGAAGAACGTTAGAAGEST: gi|124953440|gb|EL028631.1|EL028631
genomic: TTGTCAAAGGCACTGTTGCATCTGGTTTCACTACCAACTCAAATGGAGAGgttagcaatt ... aatgatgcagGTCACTGAGGTGAAATTGAAAGACGGAAGAACGTTAGAAG
EST: TTGTCAAAGGCACTGTTGCATCTGGTTTCACTACCAACTCAAATGGAGAG GTCACTGAGGTGAAATTGEST: gi|125195195|gb|EL210149.1|EL210149
genomic: TTGTCAAAGGCACTGTTGCATCTGGTTTCACTACCAACTCAAATGGAGAGgttagcaatt ... aatgatgcagGTCACTGAGGTGAAATTG
EST: TGGTTTCACTACCAACTCAAATGGAGAG GTCACTGAGGTGAAATTGAAAGACGGAAGAACGTTAGAAGCTGATATTGTGEST: gi|125047927|gb|EL120196.1|EL120196
genomic: TGGTTTCACTACCAACTCAAATGGAGAGgttagcaatt ... aatgatgcagGTCACTGAGGTGAAATTGAAAGACGGAAGAACGTTAGAAGCTGATATTGTG
EST: AGGCACTGTTGCATCTGGTTTCACTACCAACTCAAATGGAGAG GTCACTGAGGTGAAATTGAAAGACGGAAGAACGTTAGAAGCTGATATTGTG
genomic: AGGCACTGTTGCATCTGGTTTCACTACCAACTCAAATGGAGAGgttagcaatt ... aatgatgcagGTCACTGAGGTGAAATTGAAAGACGGAAGAACGTTAGAAGCTGATATTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCATTGCTTCCTTCTACGAGGGTTACTATGCCAACAAAGGAATTAACATTGTCAAAGGCACTGTTGCATCTGGTTTCACTACCAACTCAAATGGAGAGgttagcaattagcatcaccgttcaaacttgacaaacagcagtttttctctccgctgcttcaacaatatctctctgttgcttaatgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA