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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGCGGGAGGAAGGAGTTGCATCATTCTACAACGGTCTAGGTCCTTCGCTTTTAAGTATAGCTCCTTACATTGCCATCAACTTCTGCGTCTTTGATCTgtaagtctactaacagttcaaacattacccctgaatatttttaactagattgtttacatattcgataatacaatatatgcacag

Basic information

species Arabidopsis thaliana
transcript AT5G01500.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G01500.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv08s0007g02230.t01 (Vitis vinifera), 5'ss of exon 7
TGCTGCGGGAGGAAGGAGTTGCATCATTCTACAACGGTCTAGGTCCTTCGCTTTTAAGTATAGCTCCTTACATTGCCATCAACTTCTGCGTCTTTGATCTgtaagtctactaacagttcaaacattacccctgaatatttt------taactagattgtttacatattcgata---atacaatatatgcacag----
| ||  | ||||||||||||||||| ||||| || ||||| || ||||| ||| |  | ||||| |||||||||||  | ||||| ||||| |||||| ||| ||  | ||         | ||||||  || | |   |        ||  ||| | | | ||| |  || |   ||    | ||||   |     
TACTAAGAGAGGAAGGAGTTGCATCCTTCTATAAGGGTCTTGGACCTTCTCTTCTTGGAATAGCACCTTACATTGCTGTGAACTTTTGCGTTTTTGATTTgtgagcttcctcttcccatgaccattacagcttagtgagtgagaacacaaacagaatatattcatctgagacatgaatctcttctatgggtaatcag