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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTTCCTACCTATTGAATCGACCTGTGAAACTCATACTGGACCGAGATGTGGACATGATGATAACTGGTCATCGTCATAGTTTTCTTGGAAAGTACAAGgtatttccagttatttccccggaatttttaggcagtgagcaatgaaatggaaagaaacggttgtcagtagaagaaacagtgggaatagattgttagacaaactaaacaattcctttttttattgtgttctgctatcttaaag

Basic information

species Arabidopsis thaliana
transcript AT4G34890.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34890.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA15G03870.1 (Glycine max), 5'ss of exon 7
TCCTTCCTACCTATTGAATCGACCTGTGAAACTCATACTGGACCGAGATGTGGACATGATGATAACTGGTCATCGTCATAGTTTTCTTGGAAAGTACAAGgtat--ttccagttatttccccggaatttttaggcagtgagcaatgaaatggaaagaaacggttgtcagtagaagaaacagtgggaatagattgttagacaaactaaacaattcctttttttattgtgttctgctatcttaaag
||| || || || || |||||||| |||||| ||| ||||||||||||||||||||||||||||||||| || || ||||||||||| || |||||||||||||   | ||||||||| |     |  ||||    |||         ||  |   | |   || |    | |  ||| | || |||   ||| ||  |     ||||                                    
TCCATCTTATCTGTTAAATCGACCAGTGAAAATCACACTGGACCGAGATGTGGACATGATGATAACTGGGCAGCGGCATAGTTTTCTAGGGAAGTACAAGgtatggctacagttatttactt---acctttaactggtgtttttctttatacatcaacatt-ttattgtaaaactaaatactgtgaa---atttttgaattc-ttaaa------------------------------------

upper sequence: AT4G34890.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA13G41520.1 (Glycine max), 5'ss of exon 8
TCCTTCCTACCTATTGAATCGACCTGTGAAACTCATACTGGACCGAGATGTGGACATGATGATAACTGGTCATCGTCATAGTTTTCTTGGAAAGTACAAGgtat--ttccagttatttccccggaatttttaggcagtgagcaatgaaatggaaagaaacggttgtcagtagaag-aaacagtgggaatagattgt-tagacaaactaaacaattcctttttttattgtgttctgctatcttaaag
||| || || || || |||||||| |||||| ||| ||||||||||||||| ||||||||||||||||| || || ||||||||||| || |||||||||||||   | ||||||||| |    |   ||||    |||  |  |    |  |||  |||  ||    ||| ||  ||| |  | ||||   |||| |    |||                                         
TCCATCTTATCTGTTAAATCGACCAGTGAAAATCACACTGGACCGAGATGTAGACATGATGATAACTGGGCAACGCCATAGTTTTCTAGGGAAGTACAAGgtatggctacagttatttacttaca---tttaactggtg--cttttctttataaatcaacattttattgtaaaactaaataccgtgaattttttgtattcttaaa-----------------------------------------

upper sequence: AT4G34890.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv06s0004g02030.t01 (Vitis vinifera), 5'ss of exon 7
TCCTTCCTACCTATTGAATCGACCTGTGAAACTCATACTGGACCGAGATGTGGACATGATGATAACTGGTCATCGTCATAGTTTTCTTGGAAAGTACAAGgtatttccagttatttccccggaatttttaggcagtgagcaatgaaatggaaagaaacggttgtcagtagaagaaacagtgggaatagattgttagacaaactaaacaattcctttttttattgtgttctgctatcttaaag
||| || || || |||||||| || |||||||||| | | ||  ||||  | |||||||||||| |||| || || ||||  ||||||||||||||||||||     || ||  ||  |  ||||||||     || |       |   |   ||      | |    ||         ||    |     | |  |  ||  |   ||     ||  ||  |||                 
TCCATCATATCTGTTGAATCGGCCAGTGAAACTCACATTAGATAGAGACATAGACATGATGATATCTGGGCAGCGCCATACCTTTCTTGGAAAGTACAAGgtga---cattttctttacttgaattttttcatggtaatatccttagcagcttgatgtttcttttttcaggttttctgttgaatgttttgggatgaaataatcatgaaacaatgttacttgatgtag---------------