1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAACTTGTTGTGAAGGCGGTTTCACTAGCCATCGCCCGTGATGGAGCCAGTGGTGGTGTCGTACGGACTGTCATAgtaagatctttctctgaccagaagctcgctgaagcgaaacttatgtaacctccttaatggtacttaattggcaaactgtttttgatgtttttgaacag
species | Arabidopsis thaliana |
transcript | AT4G31300.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CCCGTGATGGAGCCAGTGGTGGTGTCGTACGGACTGTCATA ATCAACTCAGAGGGAGTGACGAGAAACTTTTACCCTGGAGATAAGTTGCAGEST: gi|116424148|gb|EG466740.1|EG466740
genomic: CCCGTGATGGAGCCAGTGGTGGTGTCGTACGGACTGTCATAgtaagatctt ... ttttgaacagATCAACTCAGAGGGAGTGACGAGAAACTTTTACCCTGGAGATAAGTTGCAG
EST: TAGCCATCGCCCGTGATGGAGCCAGTGGTGGTGTCGTACGGACTGTCATA ATCAACTCAGAGGGAGTGACGAGAAACTTTTACCCTGGAGATAAGTTGCAGEST: gi|86074232|gb|DR369989.1|DR369989
genomic: TAGCCATCGCCCGTGATGGAGCCAGTGGTGGTGTCGTACGGACTGTCATAgtaagatctt ... ttttgaacagATCAACTCAGAGGGAGTGACGAGAAACTTTTACCCTGGAGATAAGTTGCAG
EST: TAGCCATCGCCCGTGATGGAGCCAGTGGTGGTGTCGTACGGACTGTCATA ATCAACTCAGAGGGAGTGACGAGAAACTTTTACCCTGGAGATAAGTTGCAGEST: gi|125117854|gb|EL166813.1|EL166813
genomic: TAGCCATCGCCCGTGATGGAGCCAGTGGTGGTGTCGTACGGACTGTCATAgtaagatctt ... ttttgaacagATCAACTCAGAGGGAGTGACGAGAAACTTTTACCCTGGAGATAAGTTGCAG
EST: GGTGTCGTACGGACTGTCATA ATCAACTCTAGAGGGAGTGACGAGAAACTTTTACCCTGGAGATAAGTTGCAEST: gi|164177475|gb|EL974176.1|EL974176
genomic: GGTGTCGTACGGACTGTCATAgtaagatctt ... ttttgaacagATCAACTC-AGAGGGAGTGACGAGAAACTTTTACCCTGGAGATAAGTTGCA
EST: GGAGCCAGTGGTGGTGTCGTACGGACTGTCATA ATCAACTCAGAGGGAGTGACGAGAAEST: gi|164216612|gb|ES189524.1|ES189524
genomic: GGAGCCAGTGGTGGTGTCGTACGGACTGTCATAgtaagatctt ... ttttgaacagATCAACTCAGAGGGAGTGACGAGAA
EST: TAGCCATCGCCCGTGATGGAGCCAGTGGTGGTGTCGTACGGACTGTCATA ATCAACTCAGAGGGAGTGACGAGAAACTTTTACCCTGGAGATAAGTTGCEST: gi|47831542|gb|CK121226.1|CK121226
genomic: TAGCCATCGCCCGTGATGGAGCCAGTGGTGGTGTCGTACGGACTGTCATAgtaagatctt ... ttttgaacagATCAACTCAGAGGGAGTGACGAGAAACTTTTACCCTGGAGATAAGTTGC
EST: TAGCCATCGCCCGTGATGGAGCCAGTGGTGGTGTCGTACGGACTGTCATA ATCAACTCAGAGGGAGTGACGAGAAACTTTTACCCTGGAGATAAGTTGCAGEST: gi|116444625|gb|EG487217.1|EG487217
genomic: TAGCCATCGCCCGTGATGGAGCCAGTGGTGGTGTCGTACGGACTGTCATAgtaagatctt ... ttttgaacagATCAACTCAGAGGGAGTGACGAGAAACTTTTACCCTGGAGATAAGTTGCAG
EST: TAGCCATCGCCCGTGATGGAGCCAGTGGTGGTGTCGTACGGACTGTCATA ATCAACTCAGAGGGAGTGACGAGAAACTTTTACCCTGGAGATAAGTTGCAG
genomic: TAGCCATCGCCCGTGATGGAGCCAGTGGTGGTGTCGTACGGACTGTCATAgtaagatctt ... ttttgaacagATCAACTCAGAGGGAGTGACGAGAAACTTTTACCCTGGAGATAAGTTGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACTTGTTGTGAAGGCGGTTTCACTAGCCATCGCCCGTGATGGAGCCAGTGGTGGTGTCGTACGGACTGTCATAgtaagatctttctctgaccagaagctcgctgaagcgaaacttatgtaacctccttaatggtacttaattggcaaactgtttttgatgtttttgaacag
- - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG