1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATCCAACTTATATAATGGCACCGGTCTTGAAAACTCGCTCTGCCCGAGACGAGCTGAAGAAGTTGTTTGCAGgttcgtaaaactcagtttagcataaggatttagatatgttcactatcacacactaaggattctatgttcctttttgcag
species | Arabidopsis thaliana |
transcript | AT4G17840.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGTCTTGAAAACTCGCTCTGCCCGAGACGAGCTGAAGAAGTTGTTTGCAG CGTGGTATGAGCGEST: gi|125058939|gb|EL127616.1|EL127616
genomic: GGTCTTGAAAACTCGCTCTGCCCGAGACGAGCTGAAGAAGTTGTTTGCAGgttcgtaaaa ... ctttttgcagCGTGGTATGAGCG
EST: GGTCTTGAAAACTCGCTCTGCCCGAGACGAGCTGAAGAAGTTGTTTGCAG CGTGGTATGAGCGAAGACAGATGAAEST: gi|86080454|gb|DR376211.1|DR376211
genomic: GGTCTTGAAAACTCGCTCTGCCCGAGACGAGCTGAAGAAGTTGTTTGCAGgttcgtaaaa ... ctttttgcagCGTGGTATGAGCGAAGACAGATGAA
EST: GGTCTTGAAAACTCGCTCTGCCCGAGACGAGCTGAAGAAGTTGTTTGCAG CGTGGTATGAGCGAAGACAGATGAAGAAAATCTACTCTCCTCTTCTTGAAGEST: gi|116444842|gb|EG487434.1|EG487434
genomic: GGTCTTGAAAACTCGCTCTGCCCGAGACGAGCTGAAGAAGTTGTTTGCAGgttcgtaaaa ... ctttttgcagCGTGGTATGAGCGAAGACAGATGAAGAAAATCTACTCTCCTCTTCTTGAAG
EST: GGTCTTGAAAACTCGCTCTGCCCGAGACGAGCTGAAGAAGTTGTTTGCAG CGTGGTATGAGCGAAGACAGATGAAGAAAATCTACTCTCCTCTTCTTGAAGEST: gi|19799440|gb|AU230730.1|AU230730
genomic: GGTCTTGAAAACTCGCTCTGCCCGAGACGAGCTGAAGAAGTTGTTTGCAGgttcgtaaaa ... ctttttgcagCGTGGTATGAGCGAAGACAGATGAAGAAAATCTACTCTCCTCTTCTTGAAG
EST: GCTGAAGAAGTTGTTTCCAG CGTGGTATGAGCGAAGACAGATGAAGAAAATCTACTCTCCTCTTCTTGAAGEST: gi|116444840|gb|EG487432.1|EG487432
genomic: GCTGAAGAAGTTGTTTGCAGgttcgtaaaa ... ctttttgcagCGTGGTATGAGCGAAGACAGATGAAGAAAATCTACTCTCCTCTTCTTGAAG
EST: GGTCTTGAAAACTCGCTCTGCCCGAGACGAGCTGAAGAAGTTGTTTGCAG CGTGGTATGAGCGAAGACAGATGAAGAAAATCTACTCTCCTCTTCTTGAAG
genomic: GGTCTTGAAAACTCGCTCTGCCCGAGACGAGCTGAAGAAGTTGTTTGCAGgttcgtaaaa ... ctttttgcagCGTGGTATGAGCGAAGACAGATGAAGAAAATCTACTCTCCTCTTCTTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCAACTTATATAATGGCACCGGTCTTGAAAACTCGCTCTGCCCGAGACGAGCTGAAGAAGTTGTTTGCAGgttcgtaaaactcagtttagcataaggatttagatatgttcactatcacacactaaggattctatgttcctttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT