1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTTTTTGCAGACTACAACTCAAAGCTTCTTGAATCAACTAATTATATTACCCGACGGCAAGCTATTAAGgtagagtaacttagaggagtgatgatatcatcgatggttaatcacgaaaaagatagcagtgacagagcattctgatggattgtaatgtgtaaaattttacag
species | Arabidopsis thaliana |
transcript | AT4G17270.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTAATTATATTACCCGACGGCAAGTCTATTAAG TTGTTGGGCGATATATTATTGGATAGGTCAAATTCGGCTGTGATGACGAAEST: gi|86088108|gb|DR383867.1|DR383867
genomic: CTAATTATATTACCCGACGGCAAG-CTATTAAGgtagagtaac ... aattttacagTTGTTGGGCGATATATTATTGGATAGGTCAAATTCGGCTGTGATGACGAA
EST: CAAAGCTTCTTGAATCAACTAATTATATTACCCGACGGCAAGCTATTAAG TTGTTGGGCGATATATTATTGGATAGGTCAAATTCGGCTGTGATGACGAAGEST: gi|116482972|gb|EG525564.1|EG525564
genomic: CAAAGCTTCTTGAATCAACTAATTATATTACCCGACGGCAAGCTATTAAGgtagagtaac ... aattttacagTTGTTGGGCGATATATTATTGGATAGGTCAAATTCGGCTGTGATGACGAAG
EST: CAA-GCTTCTTGAATCAACTAATTATATTACCCGACGGCAAGCTATTAAG T-GT-GGGCGATATATTAT
genomic: CAAAGCTTCTTGAATCAACTAATTATATTACCCGACGGCAAGCTATTAAGgtagagtaac ... aattttacagTTGTTGGGCGATATATTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTTTGCAGACTACAACTCAAAGCTTCTTGAATCAACTAATTATATTACCCGACGGCAAGCTATTAAGgtagagtaacttagaggagtgatgatatcatcgatggttaatcacgaaaaagatagcagtgacagagcattctgatggattgtaatgtgtaaaattttacag
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