1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATCTTCTGGAGAATAAAGGTGTGCCTGGGCCTTATCTTATAGTTGCTCCAAAAGCTGTGCTACCAAATTGGGTAAACGAGTTTGCAACATGGGTACCAAGgtatgttgcaaacaatatttctcttggtactgagaaattgcactggtatgaatgttatgtctgaaaatcagcctttttgtttttttgacag
species | Arabidopsis thaliana |
transcript | AT3G06010.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TTGGGTAAACGAGTTTGCAACATGGGTACCAAG CATTGCAGCTTTTCTGTATGATGGACGTTTAGAEST: gi|164124026|gb|ES072896.1|ES072896
genomic: TTGGGTAAACGAGTTTGCAACATGGGTACCAAGgtatgttgca ... tttttgacagCATTGCAGCTTTTCTGTATGATGGACGTTTAGA
EST: TAAACGAGTTTGCAACATGGGTACCAAG CATTGCAGCTTTTCTTTATGATGGACGTTTAGAGGAAAGGAAAGCAATAAG
genomic: TAAACGAGTTTGCAACATGGGTACCAAGgtatgttgca ... tttttgacagCATTGCAGCTTTTCTGTATGATGGACGTTTAGAGGAAAGGAAAGCAATAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTTCTGGAGAATAAAGGTGTGCCTGGGCCTTATCTTATAGTTGCTCCAAAAGCTGTGCTACCAAATTGGGTAAACGAGTTTGCAACATGGGTACCAAGgtatgttgcaaacaatatttctcttggtactgagaaattgcactggtatgaatgttatgtctgaaaatcagcctttttgtttttttgacag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG