Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAATGGTATTGAAAATCAGCTCAAAGTTTGAACTGAGGCGTTTTTGCCGTACAGCGGGGGCTGTCGCCCATgtaagtgttattaattggctatctgaatgagtatctaagggtggttttatcctagcttttaatcctttaattatcaaacag

Basic information

species Arabidopsis thaliana
transcript AT3G03960.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G03960.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA16G26920.1 (Glycine max), 5'ss of exon 7
GATAATGGTATTGAAAATCAGCTCAAAGTTTGAACTGAGGCGTTTTTGCCGTACAGCGGGGGCTGTCGCCCATgtaagtgttattaattggctatctgaatgagtatctaagggtggttttatcctagcttttaatcctttaattatcaaacag---
| | |||||  |||||||||||||||||||||||||  | || |||||||| ||| | ||  |||| |||   ||  ||| | ||   ||  ||| ||  |  |||   ||| |   || ||   |   | | |  | ||| ||| |||  ||    
GCTTATGGTTCTGAAAATCAGCTCAAAGTTTGAACTACGTCGATTTTGCCGGACAACTGGTTCTGTTGCCATGgtttgtgctttt---tgcttatttggctacgta---aagaggttttctactttttgtctaacccattttattttcatgcaatag

upper sequence: AT3G03960.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA02G07910.1 (Glycine max), 5'ss of exon 7
GATAATGGTATTGAAAATCAGCTCAAAGTTTGAACTGAGGCGTTTTTGCCGTACAGCGGGGGCTGTCGCCCATgtaagtgttattaattggctatctgaatgagtatctaagggtggttttatcctagcttttaatcctttaattatc---aaacag
| | |||||  |||||||||||||||||||||||||  | || |||||||| ||| | ||  |||| |||   ||  ||| | ||| ||    || ||  |  |||   ||| |   || ||   |   | | |  | ||| ||| ||   ||| ||
GCTTATGGTTCTGAAAATCAGCTCAAAGTTTGAACTACGTCGATTTTGCCGGACAACCGGCTCTGTTGCCATGgtttgtgcttttactt----atttggctacgta---aagaggttttctactttctgtctaacccattttattttcctgaaatag

upper sequence: AT3G03960.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv08s0007g07460.t01 (Vitis vinifera), 5'ss of exon 7
GATAATGGTATTGAAAATCAGCTCAAAGTTTGAACTGAGGCGTTTTTGCCGTACAGCGGGGGCTGTCGCCCATgtaag--tgttattaattg--gctatctgaatgagtatctaagggtggttttatcctagcttttaatcctttaattatcaaacag
  | ||||| ||||||||||||||||||||||||||| |||| |||||||||||| | || ||||| ||   ||||||  | |||  | | |  | | | ||||  | | | |||   |||||| ||   |     |  |  ||||||     |||||
ACTTATGGTTTTGAAAATCAGCTCAAAGTTTGAACTGCGGCGATTTTGCCGTACAACTGGAGCTGTTGCAGTTgtaagcatattagcactggatgttgtttgaaaaattctttaa---tggtttcataaca-----tgcttatttaatgtgacaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86064113|gb|DR359870.1|DR359870
EST:     CAAAGTTTGAACTGAGGCGTTTTTGCCGTACAGCGGGGGCTGTCGCCCAT                         TTGAAGCTTAGCCGGCCAAGCCCTGAAGATCTTGGATATGTTGATTCTATA
genomic: CAAAGTTTGAACTGAGGCGTTTTTGCCGTACAGCGGGGGCTGTCGCCCATgtaagtgtta ... tatcaaacagTTGAAGCTTAGCCGGCCAAGCCCTGAAGATCTTGGATATGTTGATTCTATA
EST: gi|47831127|gb|CK120811.1|CK120811
EST:     CAAAGTTTGAACTGAGGCGTTTTTGCCGTACAGCGGGGGCTGTCGCCCAT                         TTGAAGCTTAGCCGGCCAAGCCCTGAAGATCTTGGATATGTTGATTCTATA
genomic: CAAAGTTTGAACTGAGGCGTTTTTGCCGTACAGCGGGGGCTGTCGCCCATgtaagtgtta ... tatcaaacagTTGAAGCTTAGCCGGCCAAGCCCTGAAGATCTTGGATATGTTGATTCTATA
EST: gi|125043309|gb|EL115578.1|EL115578
EST:     CAAAGTTTGAACTGAGGCGTTTTTGCCGTACAGCGGGGGCTGTCGCCCAT                         TTGAAGCTTAGCCGGCCAAG
genomic: CAAAGTTTGAACTGAGGCGTTTTTGCCGTACAGCGGGGGCTGTCGCCCATgtaagtgtta ... tatcaaacagTTGAAGCTTAGCCGGCCAAG