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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTGCAATAGCTGCGGGAATGGTACACAGCTTGGCTCTAGCAGAAGATGGTGCATTCTTTTATTGGGTTTCCTCTGACTCCAATCTTAGATGCCAACAGgttggattcaaccttctttttttatcttaaaaaaacatataactcaatatgtctcgcatagtaataaccaaaatttggttaatcctgattcctgcag

Basic information

species Arabidopsis thaliana
transcript AT3G03790.3
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G03790.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA19G29100.1 (Glycine max), 5'ss of exon 6
GACTGCAATAGCTGCGGGAATGGTACACAGCTTGGCTCTAGCAGAAGATGGTGCATTCTTTTATTGGGTTTCCTCTGACTCCAATCTTAGATGCCAACAGgttggattcaaccttcttt-ttttatcttaaaaaaacatataact---------caatatgtctcgcatagtaataa----ccaaaatttggtt-aatcctgattcctgcag
|  | | |||||||| ||||||||||||||| |||||||  |||| ||||| ||||| ||||||||||| ||||||||  |  ||||||||||||||||||||    | | |||      |||| |||| |       | ||  |         ||| |  | | |  ||  ||||     ||    |||| || |||  |  ||    |||
GGTTTCTATAGCTGCTGGAATGGTACACAGCATGGCTCTTACAGATGATGGCGCATTATTTTATTGGGTCTCCTCTGATCCTGATCTTAGATGCCAACAGgttcttattatcctctgaaattttctcttcacgtgttttttatttttcccgagacaaaacatgttgattaaaaatacttccccccgttttgttttaatttttttttgaacag

upper sequence: AT3G03790.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA16G04300.1 (Glycine max), 5'ss of exon 6
GACTGCAATAGCTGCGGGAATGGTACACAGCTTGGCTCTAGCAGAAGATGGTGCATTCTTTTATTGGGTTTCCTCTGACTCCAATCTTAGATGCCAACAGgttgg-attcaaccttctttttttatcttaaaaa--aacatataactcaatatgtctcgcatagtaataaccaaaatttggttaatcctgattcctgcag---------
|  | | |||||||| ||||||||||||||| |||||||  |||| ||||||||||| ||||||||||| || |||||  |  ||||||||||||||||||||   |||   |  |   ||||| |||| | |   |   |||   ||   |       |||  | || |  || | ||      |  |  ||  |             
GGTTTCTATAGCTGCTGGAATGGTACACAGCATGGCTCTTACAGATGATGGTGCATTATTTTATTGGGTCTCTTCTGATCCTGATCTTAGATGCCAACAGgttcttattatgctctgaatttttctcttcacatgtattttatttttcccgagacaaaacatgttgattaaaaacacttcccccctttttgtttatttttttttaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502472|gb|HO208012.1|HO208012
EST:     GTGCATTCTTTTATTGGGTTTCCTCTGACTCCAATCTTAGATGCCAACAG                         TTGCATTCGCTGCACGGTAAAACAGTTGTGAGCATTTCAGCGGGTAAATAC
genomic: GTGCATTCTTTTATTGGGTTTCCTCTGACTCCAATCTTAGATGCCAACAGgttggattca ... attcctgcagTTGCATTCGCTGCACGGTAAAACAGTTGTGAGCATTTCAGCGGGTAAATAC