1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAACTTATCAGTGAGTTTCATAAGCATCATATTGCTTCCTATTGTTGGAAATGCAGCTGAACATGCTGGAGCCGTTATTTTTGCCTTTAAGAACAAGCTTgtaagttcgattttattccttaaaattatcgcttttaatcgatcccgagatctattatataatgacacaatgcaagaacttatatcaatccaaataatttctag
species | Arabidopsis thaliana |
transcript | AT2G38170.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CCGTTATTTTTGCCTTTAAGAACAAGCTT GACATATCTTTGGGAGTTGCGTTAGGCTCTGCGACTCAGATTGGCTTATTEST: gi|125103938|gb|EL158161.1|EL158161
genomic: CCGTTATTTTTGCCTTTAAGAACAAGCTTgtaagttcga ... taatttctagGACATATCTTTGGGAGTTGCGTTAGGCTCTGCGACTCAGATTGGCTTATT
EST: TTTTTGTCCTTTAAGAACAAGCTT GACGTATCTTTGGGAGTTGCGTTAGGCTCTGCGACTCAGATTGGCTTATTCEST: gi|125223017|gb|EL237102.1|EL237102
genomic: TTTTTG-CCTTTAAGAACAAGCTTgtaagttcga ... taatttctagGACATATCTTTGGGAGTTGCGTTAGGCTCTGCGACTCAGATTGGCTTATTC
EST: ATTTTCGCCTTTAAGAACAAGCTT GACATATCTTTGGGAGTTGCGTTAGGCTCTGCGACTCAGATTGGCTTATTC
genomic: ATTTTTGCCTTTAAGAACAAGCTTgtaagttcga ... taatttctagGACATATCTTTGGGAGTTGCGTTAGGCTCTGCGACTCAGATTGGCTTATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACTTATCAGTGAGTTTCATAAGCATCATATTGCTTCCTATTGTTGGAAATGCAGCTGAACATGCTGGAGCCGTTATTTTTGCCTTTAAGAACAAGCTTgtaagttcgattttattccttaaaattatcgcttttaatcgatcccgagatctattatataatgacacaatgcaagaacttatatcaatccaaataatttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT