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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGATCCTGCACAGAAGAATACGCTTCTTGTTTTCAAGTTTCTTCCACTCATGATCGGTTACTTTGCATTGTCTGTCCCATCAGGACTATCTATTTACTGgttggtttccctctccttgaaacttctcatctaactgttttatccatgcccttgatctactcattaaatggagtataagaaagattttctctagtaatta...

Basic information

species Arabidopsis thaliana
transcript AT2G28800.4
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G28800.4 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA12G06920.1 (Glycine max), 5'ss of exon 8
ATGATCCTGCACAGAAGAATACGCTTCTTGTTTTCAAGTTTCTTCCACTCATGATCGGTTACTTTGCATTGTCTGTCCCATCAGGACTATCTATTTACTGgttggtttccc------tctccttgaaacttctcatctaactgttttatccatgcccttgatctactcattaaatggagtataagaaagattttctctagtaatta
  |||||| | || ||||||   |||||| |||| |||||||||||||||||||| || |||||  |||| ||||||||||| |||||| | ||||||||||| ||||  |      | |  |  || | ||   |||| |   |  || | |    || ||    |   || |   | |  ||  |   ||| || || ||    
CAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTCATGATTGGCTACTTCTCATTATCTGTCCCATCTGGACTAACAATTTACTGgttagtttttcagaaactatattaaaaccatcctttctagccaataaattcttattttttatgattttgctata---acttcaaacattctttgctttattat---

upper sequence: AT2G28800.4 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA11G14960.1 (Glycine max), 5'ss of exon 8
ATGATCCTGCACAGAAGAATACGCTTCTTGTTTTCAAGTTTCTTCCACTCATGATCGGTTACTTTGCATTGTCTGTCCCATCAGGACTATCTATTTACTGgttggtttccctc--tccttgaaacttctcatctaactgttttatccatgcccttgatctactcattaaatggagtataagaaagattttctctagtaatta
  |||||| | || ||||||   |||||| |||| |||||||||||||||||||| || |||||  || | |||||||||||||||||| | ||||||||||| ||||  |     |  |   | | |    ||  ||  |  ||  || |   |  |  |    ||      |   | | | |   |||   |  | ||  
CAGATCCTTCTCAAAAGAATCAACTTCTTATTTTAAAGTTTCTTCCACTCATGATTGGCTACTTCTCACTATCTGTCCCATCAGGACTAACAATTTACTGgttagtttttcagaaactatattaataccatcctttctagtcaataaattcttatttttcatgattttgccataacttgaaacattctttgctttattat--

upper sequence: AT2G28800.4 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv06s0004g04460.t01 (Vitis vinifera), 5'ss of exon 8
ATGATCCTGCACAGAAGAATACGCTTCTTGTTTTCAAGTTTCTTCCACTCATGATCGGTTACTTTGCATTGTCTGTCCCATCAGGACTATCTATTTACTGgttggtttccctct---ccttgaaacttctcatctaactgttttatc-catgcccttgatctactcattaaatggagtataagaaagattttctctagtaatta
|||||||  | || |||||||| |||||||||||||||||||||||||||||||| ||||||||| |  | ||||||||||||||| |||| ||||||||||| |||||    |     ||      | ||||| |  | || |    |||  | | ||  || | |  |     |   ||   |||    |   | ||     
ATGATCCATCTCAAAAGAATACACTTCTTGTTTTCAAGTTTCTTCCACTCATGATTGGTTACTTTTCTCTATCTGTCCCATCAGGATTATCAATTTACTGgttagtttctgattaactatttttgtctttcatccatgtcttatgctacattacttggacttaatgaacaggataatcttagagaagtacatgcattgtg----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124843433|gb|EH927870.1|EH927870
EST:     ATGATCGGTTACTTTGCATTGTCTGTCCCATCAGGACTATCTNTTTACTG                         GCTCACAAATAATGTACTTAGTACC
genomic: ATGATCGGTTACTTTGCATTGTCTGTCCCATCAGGACTATCTATTTACTGgttggtttcc ... atggttttagGCTCACAAATAATGTACTTAGTACC
EST: gi|125150945|gb|EL183333.1|EL183333
EST:     ACTATCTATTTACTG                         GCTCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACT
genomic: ACTATCTATTTACTGgttggtttcc ... atggttttagGCTCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACT
EST: gi|86079787|gb|DR375544.1|DR375544
EST:     GGACTATCTATTTACTG                         GCTCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACT
genomic: GGACTATCTATTTACTGgttggtttcc ... atggttttagGCTCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACT
EST: gi|86079035|gb|DR374792.1|DR374792
EST:     GTTACTTTGCATTGTCTGTCCCATCAGGACTATCTATTTACTG                         GCTCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACT
genomic: GTTACTTTGCATTGTCTGTCCCATCAGGACTATCTATTTACTGgttggtttcc ... atggttttagGCTCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACT
EST: gi|124922240|gb|EL000549.1|EL000549
EST:     ACTATCTATTTACTG                         GCTCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACT
genomic: ACTATCTATTTACTGgttggtttcc ... atggttttagGCTCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACT
EST: gi|124971775|gb|EL045512.1|EL045512
EST:     CGGTTACTTTGCATTGTCTGTCCCATCAGGACTATCTATTTACTG                         GCTCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACT
genomic: CGGTTACTTTGCATTGTCTGTCCCATCAGGACTATCTATTTACTGgttggtttcc ... atggttttagGCTCACAAATAATGTACTTAGTACCGCCCAACAAGTATATCTGCGTAAACT