1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCCATATATGCAGAAGGAAAGCAACATGCCTTAGCAATAGGCTTCACCAAAATGTCAGCAAAGGACATgtaagtcaatttttcgctggaatttatttgaaaatacaaacatgtgctttgatatactttcgtatcttagccaaaatacagtctcttggctccaggcctc...
species | Arabidopsis thaliana |
transcript | AT1G09150.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAGCAACATGCCTTAGCAATAGGCTTCACCAAAATGTCAGCAAAGGACAT AAAGAGCATTAACAAAGGAATAGGAGTTGACAACATGCATTACCTCAACGAEST: gi|125070903|gb|EL136144.1|EL136144
genomic: AAGCAACATGCCTTAGCAATAGGCTTCACCAAAATGTCAGCAAAGGACATgtaagtcaat ... atgttcacagAAAGAGCATTAACAAAGGAATAGGAGTTGACAACATGCATTACCTCAACGA
EST: AAGCAACATGCCTTAGCAATAGGCTTCACCAAAATGTCAGCAAAGGACAT AAAGAGCATTAACAAAGGAAEST: gi|124887659|gb|EH966561.1|EH966561
genomic: AAGCAACATGCCTTAGCAATAGGCTTCACCAAAATGTCAGCAAAGGACATgtaagtcaat ... atgttcacagAAAGAGCATTAACAAAGGAA
EST: CCTTAGCAATAGGCTTCACCAAAATGTCAGCAAAGGACAT AAAGAGCATTAACAAAGGAATAGGAGTTGACAACATGCATTACCTCAACGAEST: gi|86061004|gb|DR356761.1|DR356761
genomic: CCTTAGCAATAGGCTTCACCAAAATGTCAGCAAAGGACATgtaagtcaat ... atgttcacagAAAGAGCATTAACAAAGGAATAGGAGTTGACAACATGCATTACCTCAACGA
EST: AAGCAACATGCCTTAGCAATAGGCTTCACCAAAATGTCAGCAAAGGACAT AAAGAGCATTAACAAAGGAATAGGAGTTGACAACATGCEST: gi|86078021|gb|DR373778.1|DR373778
genomic: AAGCAACATGCCTTAGCAATAGGCTTCACCAAAATGTCAGCAAAGGACATgtaagtcaat ... atgttcacagAAAGAGCATTAACAAAGGAATAGGAGTTGACAACATGC
EST: AATAGGCTTCACCAAAATGTCAGCAAAGGACAT AAAGAGCATTAACAAAGGAATAGGAGTTGACAACATGCATTACCTCAACGAEST: gi|124998999|gb|EL071268.1|EL071268
genomic: AATAGGCTTCACCAAAATGTCAGCAAAGGACATgtaagtcaat ... atgttcacagAAAGAGCATTAACAAAGGAATAGGAGTTGACAACATGCATTACCTCAACGA
EST: AAGCAACATGCCTTAGCAATAGGCTTCACCAAAATGTCAGCAAAGGACAT AAAGAGCATTAACAA
genomic: AAGCAACATGCCTTAGCAATAGGCTTCACCAAAATGTCAGCAAAGGACATgtaagtcaat ... atgttcacagAAAGAGCATTAACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCATATATGCAGAAGGAAAGCAACATGCCTTAGCAATAGGCTTCACCAAAATGTCAGCAAAGGACATgtaagtcaatttttcgctggaatttatttgaaaatacaaacatgtgctttgatatactttcgtatcttagccaaaatacagtctcttggctccaggcctc
- - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agccaaaa