1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TTGATGCAAAATTGCGGAATTTCACTCTTCTTCATCATTGGCAATTTTATTCCATGGAGACTACTAACAGTAGTCGgtatgattctgtttagagattgtaatctaaaatatatttttttaaatgatagatgtaatgtaattcgaaccggtcaatttaacatgatgtttgtatgtttgcag
species | Arabidopsis thaliana |
transcript | AT1G08930.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CTTCTTCATCATTGGCAATTTTATTCCATGGAGACTACTAACAGTAGTCG GATTGGTGCCAEST: gi|125040388|gb|EL112657.1|EL112657
genomic: CTTCTTCATCATTGGCAATTTTATTCCATGGAGACTACTAACAGTAGTCGgtatgattct ... atgtttgcagGATTGGTGCCA
EST: CTTCTTCATCATTGGCAATTTTATTCCATGGAGACTACTAACAGTAGTCG GATTGGTGCCATGTGTGTTCCACGEST: gi|125298742|gb|EL312827.1|EL312827
genomic: CTTCTTCATCATTGGCAATTTTATTCCATGGAGACTACTAACAGTAGTCGgtatgattct ... atgtttgcagGATTGGTGCCATGTGTGTTCCACG
EST: CTTCTTCATCATTGGCAATTTTATTCCATGGAGACTACCAACAGTAGTCG GATTGGTGCCATGTGEST: gi|125005014|gb|EL077283.1|EL077283
genomic: CTTCTTCATCATTGGCAATTTTATTCCATGGAGACTACTAACAGTAGTCGgtatgattct ... atgtttgcagGATTGGTGCCATGTG
EST: CTTCTTCATCATTGGCAATTTTATTCCATGGAGACTACTAACAGTAGTCG GATTGGTGCCA
genomic: CTTCTTCATCATTGGCAATTTTATTCCATGGAGACTACTAACAGTAGTCGgtatgattct ... atgtttgcagGATTGGTGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGATGCAAAATTGCGGAATTTCACTCTTCTTCATCATTGGCAATTTTATTCCATGGAGACTACTAACAGTAGTCGgtatgattctgtttagagattgtaatctaaaatatatttttttaaatgatagatgtaatgtaattcgaaccggtcaatttaacatgatgtttgtatgtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA