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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAAATCCAGAGAGAGCCAATGGGCATATCTTCAATGTAGGCAACCCAAACAATGAAGTGACAGTGAGACAACTTGCTGAAATGATGACTGAGgtgagaaaaattggtcatagataagaatctgagtgattttcgataaaactattatagcacacgctcaaatgttgcaaaacaaaaaatggacag

Basic information

species Arabidopsis thaliana
transcript AT1G08200.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G08200.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: LOC_Os01g73790.1 (Oryza sativa), 5'ss of exon 7
GAAAATCCAGAGAGAGCCAATGGGCATATCTTCAATGTAGGCAACCCAAACAATGAAGTGACAGTGAGACAACTTGCTGAAATGATGACTGAGgtgagaaaaattggtcatagataagaatctgagtgattttcgataaaactattatagcacacgctcaaatgttgcaaaacaaaaaatggacag
|||||||| |   | |||||||| || ||||||||||| || || || ||||||||||| || || || ||| | |||||||||||||| ||||| | |  | | |       ||     | |||| | |||  | ||    |    ||   |   |     |||  |   |||            
GAAAATCCTGCTCGTGCCAATGGTCAAATCTTCAATGTCGGGAATCCTAACAATGAAGTCACTGTTAGGCAATTGGCTGAAATGATGACAGAGgt-acatcattagcgtggcaatgtttctttgagcg-tttctgttactcatgccctaagtcttacatggttgtc-ctgtacag-----------

upper sequence: AT1G08200.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA17G05440.1 (Glycine max), 5'ss of exon 5
GAAAATCCAGAGAGAGCCAATGGGCATATCTTCAATGTAGGCAACCCAAACAATGAAGTGACAGTGAGACAACTTGCTGAAATGATGACTGAGgtgagaaaaattggtcatag-ataagaatctgagtgattttcgataaaactattatagcacacgctcaaatgttgcaaaacaaaaaatggacag
|||||||| |  || |||||||| ||||| || ||||| || |||||||||||||| || ||||| || || |||||||||||||||||  |||| |||  | |  ||   |   |  ||  ||    || |||| | |    |||| | | || || ||||   ||          || |   |||
GAAAATCCTGCCAGGGCCAATGGACATATTTTTAATGTTGGAAACCCAAACAATGAGGTTACAGTTAGGCAGCTTGCTGAAATGATGACACAGgttagaggattaagtttgattgtttgacccttttagaatttcaacatgg-tatt-tgggac-cgttcaacatttatttttgttcaattatgcag

upper sequence: AT1G08200.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: GLYMA12G30490.1 (Glycine max), 5'ss of exon 7
GAAAATCCAGAGAGAGCCAATGGGCATATCTTCAATGTAGGCAACCCAAACAATGAAGTGACAGTGAGACAACTTGCTGAAATGATGACTGAGgtgagaaaaattggtcatag-ataagaatctgagtgattttcgataaaactattatagcacacgctcaaatgttgcaaaacaaaaaatggacag
|||||||| |  || || ||||| ||||| || ||||| || |||||||||||||| || ||||| || || |||||||||||||||||| |||| |||  | |  ||   |   |  | | ||    || |||| | |    |||| | | || |  ||||   ||          || |   |||
GAAAATCCCGCCAGGGCTAATGGACATATTTTTAATGTGGGAAACCCAAACAATGAGGTTACAGTTAGGCAGCTTGCTGAAATGATGACTCAGgttagaggattaagtttgattgtttgtacctattagaatttcaacatgg-tatt-tgggac-cattcaacatttattttcgttcaattctgcag

upper sequence: AT1G08200.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv06s0061g01120.t01 (Vitis vinifera), 5'ss of exon 7
GAAAATCCAGAGAGAGCCAATGGGCATATCTTCAATGTAGGCAACCCAAACAATGAAGTGACAGTGAGACAACTTGCTGAAATGATGACTGAGgtgagaaaa--attggtc-atagataagaatctgagtgattttcgataaaactat-tatagcacacgctcaaatgttgcaaaacaaaaaatggacag
|| ||||| |  || || ||||| || ||||||||||| |||||||| |||||||| || || || || || ||||| |||||||||||||||||||  ||   ||||||  ||       ||| |   |  || |   |   ||| | ||||    | | |    |         ||            
GATAATCCTGCCAGGGCTAATGGTCACATCTTCAATGTGGGCAACCCCAACAATGAGGTTACTGTTAGGCAGCTTGCAGAAATGATGACTGAGgtgaataagcgattggtttatttgatgcaatattgatctttatttttgggactctatatattg-atgtttttcttccattcttcag-----------

upper sequence: AT1G08200.1 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv03s0017g00680.t01 (Vitis vinifera), 5'ss of exon 7
GAAAATCCAGAGAGAGCCAATGGGCATATCTTCAATGTAGGCAACCCAAACAATGAAGTGACAGTGAGACAACTTGCTGAAATGATGACTGAGgtgagaaaa--attggtcatagataagaatctgagtgattttcgataaaactattatagcacacgctcaaatgttgcaaaacaaaaaatggacag
|| ||||| |  || || ||||| || ||||||||||| |||||||||||||||||||  ||||| |  || ||||| |||||||||||||||||||   |   ||||||  |    | | |    | | || ||       ||   ||| | |  |  |  | || ||     |    | |   |||
GATAATCCTGGCAGGGCTAATGGTCACATCTTCAATGTGGGCAACCCAAACAATGAAGCTACAGTTAAGCAGCTTGCAGAAATGATGACTGAGgtgaatgagtcattggtttttttgatgcaat--attaatcttaatcttgacctctatgg-attctatatattgatgacttccttccattattcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116471821|gb|EG514413.1|EG514413
EST:     ACCCAAACAATGAAGTGACAGTGAGACAACTTGCTGAAATGATGACTGAG                         GTCTACGCCAAAGTGAGTGGAGAGACAGCTATCGAGAGTCCAACGATCGAC
genomic: ACCCAAACAATGAAGTGACAGTGAGACAACTTGCTGAAATGATGACTGAGgtgagaaaaa ... aaatggacagGTCTACGCCAAAGTGAGTGGAGAGACAGCTATCGAGAGTCCAACGATCGAC
EST: gi|164189895|gb|ES048046.1|ES048046
EST:     ACCCAAACAATGAAGTGACAGTGAGACAACTTGCTGAAATGATGACTGAG                         GTCTACGCCAAAGTGAGTGG
genomic: ACCCAAACAATGAAGTGACAGTGAGACAACTTGCTGAAATGATGACTGAGgtgagaaaaa ... aaatggacagGTCTACGCCAAAGTGAGTGG
EST: gi|164003382|gb|EL993994.1|EL993994
EST:     ACCCAAACAATGAAGTGACAGTGAGACAACTTGCTGAAATGATGACTGAG                         GTCTACGCCAAAGTGAGTGGAGAGACAGCTATCGAG
genomic: ACCCAAACAATGAAGTGACAGTGAGACAACTTGCTGAAATGATGACTGAGgtgagaaaaa ... aaatggacagGTCTACGCCAAAGTGAGTGGAGAGACAGCTATCGAG
EST: gi|164193536|gb|ES048107.1|ES048107
EST:     ACCCAAACAATGAAGTGACAGTGAGACAACTTGCTGAAATGATGACTGAG                         GTCTACGCCAAAGTGAGTGGAGAGACAGCTATCGA
genomic: ACCCAAACAATGAAGTGACAGTGAGACAACTTGCTGAAATGATGACTGAGgtgagaaaaa ... aaatggacagGTCTACGCCAAAGTGAGTGGAGAGACAGCTATCGA