1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTGGGAGATCTAGCAGTTGTTGATATTTCTGCTACAACTATAGATGAGGACGGGTCAACGGGTCAAGCGATTCCAGATGCTGAAAGCAAAGgttttagaactgttatatttcaacagagatttgtggttgaaatctcttagtccattgaaatcattgcttgcaaatgaatactgagattggcggttgtgtgaacag
species | Arabidopsis thaliana |
transcript | AT5G55220.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGATGAGGACGGGTCAACGGGTCAAGCGATTCCAGATGCTGAAAGCAAAG GTTTTCACTTTGACACTGAAGAAGGGAATAGAEST: gi|125286520|gb|EL300605.1|EL300605
genomic: AGATGAGGACGGGTCAACGGGTCAAGCGATTCCAGATGCTGAAAGCAAAGgttttagaac ... gtgtgaacagGTTTTCACTTTGACACTGAAGAAGGGAATAGA
EST: CGGGTCAACGGGTCAAGCGATTCCAGATGCTGAGAGCAAAG GTTTTCACTTTGACACTGAAGAAGGGAGTAGATTACTTCCTGGATTCCTTGEST: gi|125245348|gb|EL259433.1|EL259433
genomic: CGGGTCAACGGGTCAAGCGATTCCAGATGCTGAAAGCAAAGgttttagaac ... gtgtgaacagGTTTTCACTTTGACACTGAAGAAGGGAATAGATTACTTCCTGGATTCCTTG
EST: CGATTCCAGATGCTGAAAGCAAAG GTTTTCACTTTGACACTGAAGAAGGGAATAGATTACTTCCTGGATTCCTTG
genomic: CGATTCCAGATGCTGAAAGCAAAGgttttagaac ... gtgtgaacagGTTTTCACTTTGACACTGAAGAAGGGAATAGATTACTTCCTGGATTCCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGGAGATCTAGCAGTTGTTGATATTTCTGCTACAACTATAGATGAGGACGGGTCAACGGGTCAAGCGATTCCAGATGCTGAAAGCAAAGgttttagaactgttatatttcaacagagatttgtggttgaaatctcttagtccattgaaatcattgcttgcaaatgaatactgagattggcggttgtgtgaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG