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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGGAACAGATAATGGTGCAAGACTTCAGTTTACAACTACCAAAAAAGGTTCAATTTGGTTTGATCAAGTCTCAGCCATGCCTATGGATACTTACAAGgtttgtttacttcattgagacaacggcttatagagtctagcagcattttcaaggcagagtaattttgatttttcttgatttggtcacag

Basic information

species Arabidopsis thaliana
transcript AT5G26120.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G26120.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: EFJ11809 (Selaginella moellendorffii), 5'ss of exon 5
AAATGGAACAGATAATGGTGCAAGACTTCAGTTTACAACTACCAAAAAAGGTTCAATTTGGTTTGATCAAGTCTCAGCCATGCCTATGGATACTTACAAGgtttgtttacttcattgagacaacggcttatagagtctagcagcattttcaaggcagagtaattttgatttttcttgatttggtcacag
| | |  |||||| ||  |||    ||     | ||||  |   |||||       ||||| ||||||||||||| || |||||| |||| |||||||||||  |||    ||||  | || |      ||| |    | |     | | |   |       |||   |  |||| | |   |      
ACAAGCCACAGATCATTATGCCCAGCTCACAATCACAAGCAAAGAAAAAACAGTCTTTTGGATTGATCAAGTCTCCGCGATGCCTGTGGAAACTTACAAGgtaagttagtctcataaaaaccaaa----ataaa----aacgaagctcttattcctcgtccttttctttccttctggctccag------

upper sequence: AT5G26120.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: EFJ22660 (Selaginella moellendorffii), 5'ss of exon 5
AAATGGAACAGATAATGGTGCAAGACTTCAGTTTACAACTACCAAAAAAGGTTCAATTTGGTTTGATCAAGTCTCAGCCATGCCTATGGATACTTACAAGgtttgtttacttcattgagacaacggcttatagagtctagcagcattttcaaggcagagtaattttgatttttcttgatttggtcacag
| | |  |||||| ||  |||    ||     | ||||  |   |||||       ||||| ||||||||||||| || |||||| |||| |||||||||||  |||    | ||  | ||          | | || |   | |  |   |  |   ||  ||||  ||  |  ||  |         
ACAAGCCACAGATCATTATGCCCAGCTGACAGTCACAAGCAAAGAAAAAACAGTCTTTTGGATTGATCAAGTCTCCGCGATGCCTGTGGAAACTTACAAGgtaagttagtcttataaaaac---------caaaatcaaaacgaagctcttattcctcgtgcttttctttccttctggctccag-----