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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATGGAAGGTATTGTAGAGCAAGTGCGTGATGGAAGTACTATTCGGGTTTATCTTCTTCCAGAGTTCCAGTTTGTGCAAGTATTTGTTGCGGGAGTCCAGgtatctaaacttgtttctcagttcttgctgcatgcaaggttaacgttttaacctatcactttgaaacacattcagcaatatttctctttcaatgtag

Basic information

species Arabidopsis thaliana
transcript AT5G07350.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G07350.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 6
TATGGAAGGTATTGTAGAGCAAGTGCGTGATGGAAGTACTATTCGGGTTTATCTTCTTCCAGAGTTCCAGTTTGTGCAAGTATTTGTTGCGGGAGTCCAGgtatctaaacttgtttctcagttcttgctgcatgcaaggttaacgttttaacctatcactttgaaacaca---ttcagcaatatttctctttcaatgtag
 ||| |||||||||| ||||| || || ||||| ||||| || ||||| ||| | ||||| || ||||||||||| ||||| |||||||| ||| |||||||||  |  |   ||||        ||    |   |  | | |  ||   |  ||| |   ||| | |     || |   ||| || |      | | | 
CATGCAAGGTATTGTTGAGCAGGTTCGAGATGGCAGTACCATCCGGGTCTATTTGCTTCCTGAATTCCAGTTTGTTCAAGTGTTTGTTGCAGGAATCCAGgtattgatccgcttttcatcagcactgtactagttagtggtgattttgataggtataatggtgatatatcagttttattcatagttgttgactcaggaaa

upper sequence: AT5G07350.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 5
TATGGAAGGTATTGTAGAGCAAGTGCGTGATGGAAGTACTATTCGGGTTTATCTTCTTCCAGAGTTCCAGTTTGTGCAAGTATTTGTTGCGGGAGTCCAGgta-----tctaaacttgtttctcagt----tcttg---ctgcatgc-aaggttaacgtt------ttaacctatcactttgaaacacat-tcag---caatatttctctttcaatgtag---
|||| | || ||||| |||||||| ||||||||||||||  | || |||||| | ||||||||||| |||||||| || || |||||||| ||| ||||||||     |||  |  |  || | | |    | |||   ||   ||  |||| ||  |        ||  |||||   ||||  ||| || |||    | ||| |||||||    |  |    
TATGCAGGGCATTGTTGAGCAAGTTCGTGATGGAAGTACAGTCCGAGTTTATTTGCTTCCAGAGTTTCAGTTTGTTCAGGTTTTTGTTGCCGGAATCCAGgtaagacatctgcatgttattattattattattttgggtctatttgtgaagggtattgcaatggggtttgcctattgttttggcacatatctcaatttccataattctcttgtggtaaattag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125298906|gb|EL312991.1|EL312991
EST:     ATCTTCTTCCCGAGTTCCAGTTTGTGCAAGTATTTGTTGCGGGAGTCCAG                         GCTCCATCAATGGGAAGGCGAACCACAAA
genomic: ATCTTCTTCCAGAGTTCCAGTTTGTGCAAGTATTTGTTGCGGGAGTCCAGgtatctaaac ... ttcaatgtagGCTCCATCAATGGGAAGGCGAACCACAAA
EST: gi|116439363|gb|EG481955.1|EG481955
EST:     ATCTTCTTCCAGAGTTCCAGTTTGTGCAAGTATTTGTTGCGGGAGTCCAG                         GCTCCATCAATGGGAAGGCGAACCACAAATGGAAGTGTTGTTGAGACAGTT
genomic: ATCTTCTTCCAGAGTTCCAGTTTGTGCAAGTATTTGTTGCGGGAGTCCAGgtatctaaac ... ttcaatgtagGCTCCATCAATGGGAAGGCGAACCACAAATGGAAGTGTTGTTGAGACAGTT