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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTGGTTGTTGGTGGCGGTTACATCGGTCTTGAACTCGGTGCTGCTCTGAAGGCTAACAACCTCGACGTTACCATGGTTTATCCAGAACCTTGGTGCAgtaagttgatacaagccaaaccactaccatagaattctcatcgtattccctttgcttaacacctttcctttttgttgtgtctttgaaaag

Basic information

species Arabidopsis thaliana
transcript AT5G03630.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G03630.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv08s0007g03610.t01 (Vitis vinifera), 5'ss of exon 6
GCTGTGGTTGTTGGTGGCGGTTACATCGGTCTTGAACTCGGTGCTGCTCTGAAGGCTAACAACCTCGACGTTACCATGGTTTATCCAGAACCTTGGTGCAgtaagttgatacaagccaaaccactaccatagaattctcatcgtattccctttgcttaacacctttcctttttg--ttgtgtctttgaaaag--------
|||||| ||||||| || || ||||| ||||| || ||  |||| |   ||||    |||||| | || |||  |||||||||||||||||| |||||||||||||  | |    ||||   |||      | |||||  |  |     ||    |       | |||||   |  ||  |  ||  ||           
GCTGTGATTGTTGGAGGGGGGTACATTGGTCTCGAGCTTAGTGCAGTGATGAAAATCAACAACTTAGATGTTTGCATGGTTTATCCAGAACCATGGTGCAgtaagtatagaattaccaatgaactgatcctgtattctggttctgactgctagattctttgtttgtccttaaagatttaagggttccaactaatgttgct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125027577|gb|EL099846.1|EL099846
EST:     AAGGCTAACAACCTCGACGTTACCATGGTTTATCCAGAACCTTGGTGCA                         TGCCTCGGCTTTTCACCGCTGGCATTGCTTCCTTCTACGAGGGTTACTATG
genomic: AAGGCTAACAACCTCGACGTTACCATGGTTTATCCAGAACCTTGGTGCAgtaagttgat ... ctttgaaaagTGCCTCGGCTTTTCACCGCTGGCATTGCTTCCTTCTACGAGGGTTACTATG
EST: gi|124997914|gb|EL070183.1|EL070183
EST:     AACCTTGGTGCA                         TGCCTCGGCTTTTCACCGCTGGCATTGCTTCCTTCTACGAGGGTTACTATG
genomic: AACCTTGGTGCAgtaagttgat ... ctttgaaaagTGCCTCGGCTTTTCACCGCTGGCATTGCTTCCTTCTACGAGGGTTACTATG
EST: gi|124725327|gb|EH816729.1|EH816729
EST:     GAAGGCTAACAACCTCGACGTTACCATGGTTTATCCAGAACCTTGGTGCA                         TGCCTCGGCTTTTCACCGCTGGCA
genomic: GAAGGCTAACAACCTCGACGTTACCATGGTTTATCCAGAACCTTGGTGCAgtaagttgat ... ctttgaaaagTGCCTCGGCTTTTCACCGCTGGCA