1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCTCTGGTTCGAGCTATCTCTACGGGTTCTTCGACCAGGCTTGGAAAGATAACATGACCAAAGAAGAAGCAGAGgtaacgcggttcacatcactgtatctgcatatgcaaaaatctcacaaaccccatttgtataactggtcgttgctattgtatttacgcttgtgtatttatattgcag
species | Arabidopsis thaliana |
transcript | AT4G31300.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGTTCTTCGACCAGGCTTGGAAAGATAACATGACCAAAGAAGAAGCAGAG CAACTTGTTGTGAAGGCGGTTTCACTAGCCATCGCCCGTGATGGAGCCAGTEST: gi|124841654|gb|EH926091.1|EH926091
genomic: GGTTCTTCGACCAGGCTTGGAAAGATAACATGACCAAAGAAGAAGCAGAGgtaacgcggt ... tatattgcagCAACTTGTTGTGAAGGCGGTTTCACTAGCCATCGCCCGTGATGGAGCCAGT
EST: GGTTCTTCGACCAGGCTTGGAAAGATAACATGACCAAAGAAGAAGCAGAG CAACTTGTTGTGAAGGCGGTTTCACTAGCCATCGEST: gi|86074232|gb|DR369989.1|DR369989
genomic: GGTTCTTCGACCAGGCTTGGAAAGATAACATGACCAAAGAAGAAGCAGAGgtaacgcggt ... tatattgcagCAACTTGTTGTGAAGGCGGTTTCACTAGCCATCG
EST: GGTTCTTCGACCAGGCTTGGAAAGATAACATGACCAAAGAAGAAGCAGAG CAACTTGTTGTGAAGGCGGTTTCACTAGCCATCGCCCGTGATGGAGCCAGTEST: gi|164165644|gb|ES199899.1|ES199899
genomic: GGTTCTTCGACCAGGCTTGGAAAGATAACATGACCAAAGAAGAAGCAGAGgtaacgcggt ... tatattgcagCAACTTGTTGTGAAGGCGGTTTCACTAGCCATCGCCCGTGATGGAGCCAGT
EST: GGTTCTTCGACCAGGCTTGGAAAGATAACATGACCAAAGAAGAAGCAGAG CAACTTTGTTGTGEST: gi|124943001|gb|EL019217.1|EL019217
genomic: GGTTCTTCGACCAGGCTTGGAAAGATAACATGACCAAAGAAGAAGCAGAGgtaacgcggt ... tatattgcagCAACTT-GTTGTG
EST: GGTTCTTCGACCAGGCTTGGAAAGATAACATGACCAAAGAAGAAGCAGAG CAACTTGTTGTGAAGGCGGTTTCACTAGCCATCGEST: gi|116444628|gb|EG487220.1|EG487220
genomic: GGTTCTTCGACCAGGCTTGGAAAGATAACATGACCAAAGAAGAAGCAGAGgtaacgcggt ... tatattgcagCAACTTGTTGTGAAGGCGGTTTCACTAGCCATCG
EST: GGTTCTTCGACCAGGCTTGGGAAGATAACATGACCAAAGAAGAAGCAGAG CAACTTGTTGTGAAGGCGGTTTCACTAGCCATCGCCEST: gi|125009695|gb|EL081964.1|EL081964
genomic: GGTTCTTCGACCAGGCTTGGAAAGATAACATGACCAAAGAAGAAGCAGAGgtaacgcggt ... tatattgcagCAACTTGTTGTGAAGGCGGTTTCACTAGCCATCGCC
EST: TTCTTCGACCAGGCTTGGAAAGATAACATGACCAAAGAAGAAGCAGAG CAACTTGTTGTGAAGGCGGTTTCACTAGCCATCGCCCGTGATGGAGCCAGTEST: gi|47831542|gb|CK121226.1|CK121226
genomic: TTCTTCGACCAGGCTTGGAAAGATAACATGACCAAAGAAGAAGCAGAGgtaacgcggt ... tatattgcagCAACTTGTTGTGAAGGCGGTTTCACTAGCCATCGCCCGTGATGGAGCCAGT
EST: GGTTCTTCGACCAGGCTTGGAAAGATAACATGACCAAAGAAGAAGCAGAG CAACTTGTTGTGAAGGCGGTTTCACTAGCCATCGCCCGTGATGGAGCCAGTEST: gi|124999955|gb|EL072224.1|EL072224
genomic: GGTTCTTCGACCAGGCTTGGAAAGATAACATGACCAAAGAAGAAGCAGAGgtaacgcggt ... tatattgcagCAACTTGTTGTGAAGGCGGTTTCACTAGCCATCGCCCGTGATGGAGCCAGT
EST: AAGAAGCAGAG CAACTTGTTGTGAAGGCGGTTTCACTAGCCATCGCCCGTGATGGAGCCAGTEST: gi|164215621|gb|ES204376.1|ES204376
genomic: AAGAAGCAGAGgtaacgcggt ... tatattgcagCAACTTGTTGTGAAGGCGGTTTCACTAGCCATCGCCCGTGATGGAGCCAGT
EST: CATGACCAAAGAAGAAGCAGAG CAACTTGTTGTGAAGGCGGTTTCACTAGCCATCGCCCGTGATGGAGCCAGTEST: gi|116444625|gb|EG487217.1|EG487217
genomic: CATGACCAAAGAAGAAGCAGAGgtaacgcggt ... tatattgcagCAACTTGTTGTGAAGGCGGTTTCACTAGCCATCGCCCGTGATGGAGCCAGT
EST: GGTTCTTCGACCAGGCTTGGAAAGATAACATGACCAAAGAAGAAGCAGAG CAACTTGTTGTGAAGGCGGTTTCACTAGCCATCGCCCGTGATGGAGCCAGT
genomic: GGTTCTTCGACCAGGCTTGGAAAGATAACATGACCAAAGAAGAAGCAGAGgtaacgcggt ... tatattgcagCAACTTGTTGTGAAGGCGGTTTCACTAGCCATCGCCCGTGATGGAGCCAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCTGGTTCGAGCTATCTCTACGGGTTCTTCGACCAGGCTTGGAAAGATAACATGACCAAAGAAGAAGCAGAGgtaacgcggttcacatcactgtatctgcatatgcaaaaatctcacaaaccccatttgtataactggtcgttgctattgtatttacgcttgtgtatttatattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC