Sequence
atgc intronic sequence ATGC exonic sequenceTTGCAGTGGAAGGAACACTCCATGATTTTTGCTATGCCAAGTAAACCTGGAGAATTTAGTAGATTTGACTTCCCAGATGTCCTACCAGCACCCTTAAATGgtgagagaataaacttatcgcatattcttacttgctagtcagctgttataatattactgcttcaagtaattaaacttttaaactatctgatgaaaacagt...
Basic information
species | Arabidopsis thaliana |
transcript | AT4G14210.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G14210.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os03g08570.1 (Oryza sativa), 5'ss of exon 6
TTGCAGTGGAAGGAACACTCCATGATTTTTGCTATGCCAAGTAAACCTGGAGAATTTAGTAGATTTGACTTCCCAGATGTCCTACCAGCACCCTTAAATGgtgagagaataaact-tatcgcatattcttacttgctagtcagctgttataatattactgc-ttcaagtaattaaactt-ttaaactatctgatgaaaacagt
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TTGCAATGGAAGGAACACTCCATGATATTTGCCATGCCAAACAAGCCAGGAGAATTCAGCCGGTTTGATTTTCCTGAAACATTGCCTGCACCCTTAAATGgtgagatcatatgcagcgctggagttgtttaatta--aaccaagattcccagaagtacatcgtattggtggttacttttgttttactaacacatgactgtaa-
upper sequence: AT4G14210.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA11G36810.1 (Glycine max), 5'ss of exon 5
TTGCAGTGGAAGGAACACTCCATGATTTTTGCTATGCCAAGTAAACCTGGAGAATTTAGTAGATTTGACTTCCCAGATGTCCTACCAGCACCCTTAAATGgtgagagaataaacttatcgcatattcttacttgc---tagtcagctgttat--aatattactgcttcaagta-attaaacttttaaactatctgatgaaaacagt
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TTACAATGGAAGGAGCATTCTATGATTTTTGCTATGCCAAATAAGCCTGGAGAGTTTAGTCGATTTGATTTTCCCGATGTCCTTCCCGCCCCATTAAATGgtaagatgtaagacctactgtatgtgtgtatatttatatacctaactgcagttggatgtctctataaaaagcacattgaatgcct---ttatctttggaaatc---
upper sequence: AT4G14210.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA18G00720.2 (Glycine max), 5'ss of exon 1
TTGCAGTGGAAGGAACACTCCATGATTTTTGCTATGCCAAGTAAACCTGGAGAATTTAGTAGATTTGACTTCCCAGATGTCCTACCAGCACCCTTAAATGgtgagagaataaacttatcgcatattcttacttgc---tagtcagctgttat--aatattactgcttcaagta-attaaacttttaaactatctgatgaaaacagt
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TTACAATGGAAAGAGCATTCTATGATTTTTGCTATGCCAAATAAGCCTGGAGAGTTTAGTCGATTTGATTTTCCTGAAGTTCTTCCCTCCCCATTGAATGgtaagatgtaagacctattgtatgtgtgtatatttatatacctaactgaagttggatgtctctataaaaagtacattgaatgcct---ttatctttggaaatc---
upper sequence: AT4G14210.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv09s0002g00100.t01 (Vitis vinifera), 5'ss of exon 6
TTGCAGTGGAAGGAACACTCCATGATTTTTGCTATGCCAAGTAAACCTGGAGAATTTAGTAGATTTGACTTCCCAGATGTCCTACCAGCACCCTTAAATGgtgagagaataa-acttatcgcatattcttacttgctagtcagctgttataatattactgcttcaagtaattaaacttttaaactatctgatgaaaacagt-----
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TTGCAGTGGAAGGAACATTCTATGATATTTGCAAAGCCAAGCAAGCCAGGGGAATTCAGCCGATTTGATTTCCCTGAAGTCCTTCCTGCACCCTTAAATGgtgagcaactcataagcatcat-tagcaatattta--agtcttgcatctttgtat--atgatgagcacaatttaatttttcttttaa-tgaaaaattcagtgtgacMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116473796|gb|EG516388.1|EG516388EST: AGAATTTAGTAGATTTGACTTCCCAGATGTCCTACCAGCACCCTTAAATG GTATTTGGGCTATTTTGCGGAACAACGAGATGCTG
genomic: AGAATTTAGTAGATTTGACTTCCCAGATGTCCTACCAGCACCCTTAAATGgtgagagaat ... tacgttgtagGTATTTGGGCTATTTTGCGGAACAACGAGATGCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTGCAGTGGAAGGAACACTCCATGATTTTTGCTATGCCAAGTAAACCTGGAGAATTTAGTAGATTTGACTTCCCAGATGTCCTACCAGCACCCTTAAATGgtgagagaataaacttatcgcatattcttacttgctagtcagctgttataatattactgcttcaagtaattaaacttttaaactatctgatgaaaacagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgaaa