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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGCTCTAACACATCCTCTGTCAGTCGACAAATATGAGAAGCTGAAGAATCAGCAATTGAAACCTGATTTCTTAGATATGGTTCCTTGGTATTCAGGgtatgtcaatgctacactaaaatttcccctttttgcttaccattgtttcaatgtggtcagtaaacgatgaaggcagtttcactaggtgctgacctatctaattatatatttcag

Basic information

species Arabidopsis thaliana
transcript AT4G11800.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G11800.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA17G36310.1 (Glycine max), 5'ss of exon 5
GTGGGCTCTAACACATCCTCTGTCAGTCGACAAATATGAGAAGCTGAAGAATCAGCAATTGAAACCTGATTTCTTAGATATGGTTCCTTGGTATTCAGGgtatgtcaatgc-tacactaaaatttcccctttttgcttaccattgtttcaatgtggtcagtaaacgatgaaggcagtttcactaggtgctgacctatctaattatatatttcag
 |||||||| || || ||  | || ||  |  ||||||||||| |||||||  | ||| |||| |||||||| ||||| |||||||||||||| || ||||||||       || | ||   | |  |||  ||  ||   |   ||| | |    |||      | ||||||  || |    | |||  |    |  ||  || ||| | |||
ATGGGCTCTCACTCACCCATTATCTGTTAAAGAATATGAGAAGTTGAAGAAGAAACAAATGAAGCCTGATTTTTTAGACATGGTTCCTTGGTACTCTGGgtatgtatgcatataaaatattttgtttcctagtttttttttaaaattttatt----tcaaggggtgttgaaggttgtcttga-atgtgtggttacactta-ctaaataatgcag

upper sequence: AT4G11800.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA14G08860.1 (Glycine max), 5'ss of exon 5
GTGGGCTCTAACACATCCTCTGTCAGTCGACAAATATGAGAAGCTGAAGAATCAGCAATTGAAACCTGATTTCTTAGATATGGTTCCTTGGTATTCAGGgtatgtcaatgc-tacactaaa-atttcccctttttgcttaccattgtttcaatgtggtcagtaaacgatgaaggcagt-ttcactaggtgctgacctatctaattatatatttcag
 |||||||| || || ||  | || ||  |  ||||||||||| |||||||  ||||| |||| |||||||| ||||| |||||||| ||||| || ||||||||   |   || |  ||  ||||    |    | ||    || ||| | | |  |||      | ||||||  || || | || ||| | ||    ||   || ||| | |||
ATGGGCTCTCACTCACCCATTATCTGTTAAAGAATATGAGAAGTTGAAGAAGAAGCAAATGAAGCCTGATTTTTTAGACATGGTTCCATGGTACTCTGGgtatgtatgtatgtatataaagtattttgtttcccagtttttttttttttaatttttttcaaggggtgttgaaggttgtcttgaatatgtggttaca---cttgctaaataatgcag

upper sequence: AT4G11800.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 6
GTGGGCTCTAACACATCCTCTGTCAGTCGACAAATATGAGAAGCTGAAGAATCAGCAATTGAAACCTGATTTCTTAGATATGGTTCCTTGGTATTCAGGgtatgt---caatgcta--cactaaaatttcccctttttgcttaccattgtttcaatgtggtcagtaaacgatgaaggca-gtttcactag------gtgctgacctatctaat-tatatatttcag
 |||||||| || || ||| |||||||  |  | |||||| || |||||||  ||||| |||| ||||||||||| |||||||| ||||||||||| |||||| |   ||||  |   || | |  |      |  ||  ||   ||       | | ||| |||     |  ||  |    || |||||      || || || |  |  ||   | | || |||
ATGGGCTCTTACTCACCCTTTGTCAGTTAAAGATTATGAGGAGTTGAAGAAAAAGCAAATGAAGCCTGATTTCTTGGATATGGTCCCTTGGTATTCGGGgtatatgttcaatattcgtcatttatttagttattcctttttttttatgaagaggagggggttagttggaaagaaaatctcagttaactagttaactgtcctcactttgccgatgcttgtgttgcag

upper sequence: AT4G11800.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S72_100V6.1 (Physcomitrella patens), 5'ss of exon 4
GTGGGCTCTAACACATCCTCTGTCAGTCGACAAATATGAGAAGCTGAAGA-ATCAGCAATTGAAACCTGATTTCTTAGATATGGTTCCTTGGTATTCAGGgtatgtcaatgctacactaaaatttcccctttttgcttacc---attgtttcaatgtggtcag---taaacgatgaaggcagtttcactaggtgctgacctatctaattatatatttcag
 |||||  | |||||||||| | | |     ||| |||    || ||| |   | |  | || | ||||| ||  | |||||||||||||||||||||||||  ||  |  || || |  |  ||    | || || | |    |   ||  | ||| ||  |   ||   | ||||    |  |   | |    ||     ||                
ATGGGCATTGACACATCCTCAGCCGGAGACGAAAAATGGACCGCAGAAAACGACTGTCACTGCA-CCTGAGTTTCTGGATATGGTTCCTTGGTATTCAGGgtgcgtgga--cttcatttcatcttagtatcttagcattcttaaaccattctattgttgttgggcttacgtggtgaaaatgggat-ggtggcaattggggggtcag--------------

upper sequence: AT4G11800.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S147_29V6.1 (Physcomitrella patens), 5'ss of exon 5
GTGGGCTCTAACACATCCTCTGTCAGTCGACAAATATGAGAAGCTGAAGAATCAGCAATTGAAACCTGATTTCTTAGATATGGTTCCTTGGTATTCAGGgtatgtcaatgctacactaaaatttcccctttttgcttaccattgtttcaatgtggtcagtaaacgatgaaggcagtttcactaggtgct---gacctatctaattatatatttcag----------------------------------------------------
 ||||| ||  ||||||       ||    ||   |||   | |  |  |||   |     || ||||| || || |||||||||||||||||||||||||||     | |||| |   || || ||   | || ||    |  || ||   |      ||    ||  |     |||   ||  |  |    |  | |  ||| || |  |  ||                                                    
ATGGGCACTCTCACATCT------AGCAAGCA---ATGCACAACAAAGAAATACACTTACAAAGCCTGAGTTTTTGGATATGGTTCCTTGGTATTCAGGgtatagt--ttctactcctcaaatttcctagtatgtttgt-gtatttgcaccatacattatactgtatatattttatttttttatttttttaaaaattgtagaatgatttgctctagagtatactctccatgttgaagtgtgcggggttgagcttggttgttgtggtag