1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CGGTTAAGAGAAGATGGTAGTCTTATCGGGGTGTTGAGCACAGAACAGTCCAAAACAGATGATGAACTTCTGCAAATGTCTCGTTCATGGGATATCGTAGgtcagatttctcctgccatttcctgtttttggcaattataatataacacttggaatattgaactccttctgtctgcttttttgaatctttgaatctttgtag
species | Arabidopsis thaliana |
transcript | AT3G27740.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CAAAACAGATGATGAACTTCTGCAAATGTCTCGTTCATGGGATATCGTAG GTATTGATCTAATAAGTGATGTTTCATGTAAATCTCCCTATGAATGGGTTGEST: gi|124711160|gb|EH802562.1|EH802562
genomic: CAAAACAGATGATGAACTTCTGCAAATGTCTCGTTCATGGGATATCGTAGgtcagatttc ... atctttgtagGTATTGATCTAATAAGTGATGTTTCATGTAAATCTCCCTATGAATGGGTTG
EST: CAAAACAGATGATGAACTTCTGCAAATGTCTCGTTCATGGGATATCGTAG GTATTGATCTAATAAGTGATGTTTCATGTAAATCTCCCTATEST: gi|116459028|gb|EG501620.1|EG501620
genomic: CAAAACAGATGATGAACTTCTGCAAATGTCTCGTTCATGGGATATCGTAGgtcagatttc ... atctttgtagGTATTGATCTAATAAGTGATGTTTCATGTAAATCTCCCTAT
EST: CAAAACAGATGATGAACTTCTGCAAATGTCTCGTTCATGGGATATCGTAG GTATTGATCTAATAAGTGATGTTTCATGTAAATCTCCCTATGAATGGGTTGEST: gi|47830985|gb|CK120669.1|CK120669
genomic: CAAAACAGATGATGAACTTCTGCAAATGTCTCGTTCATGGGATATCGTAGgtcagatttc ... atctttgtagGTATTGATCTAATAAGTGATGTTTCATGTAAATCTCCCTATGAATGGGTTG
EST: CAAAACAGATGATGAACTTCTGCAAATGTCTCGTTCATGGGATATCGTAG GTATTGATCTAATAAGTGATGTTTCATGTAAATCTCCCTATGAATGGGTTG
genomic: CAAAACAGATGATGAACTTCTGCAAATGTCTCGTTCATGGGATATCGTAGgtcagatttc ... atctttgtagGTATTGATCTAATAAGTGATGTTTCATGTAAATCTCCCTATGAATGGGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGTTAAGAGAAGATGGTAGTCTTATCGGGGTGTTGAGCACAGAACAGTCCAAAACAGATGATGAACTTCTGCAAATGTCTCGTTCATGGGATATCGTAGgtcagatttctcctgccatttcctgtttttggcaattataatataacacttggaatattgaactccttctgtctgcttttttgaatctttgaatctttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG