1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTACAATCCTTATTTCCCTGGGGGAGCAATTGCTATGCCGAAAATGCTCAATGATGAAGCTGTTGAGTATGAAGATGGTGTCCCCGCCACAGAGGCACAGgttatttttcctccacttaaaatataagaacataaatctttatgccttatggtactgtcctttctcagtgtcatgatataaactttactttacggtgcag
species | Arabidopsis thaliana |
transcript | AT3G27240.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: ATGATGAAGCTGTTGAGTATGAAGATGGTGTCCCCGCCACAGAGGCACAG ATGGGTAAAGATATTGTATCATTCTTGGCCTGGGCAGCTGAACCAGAAATGEST: gi|116435812|gb|EG478404.1|EG478404
genomic: ATGATGAAGCTGTTGAGTATGAAGATGGTGTCCCCGCCACAGAGGCACAGgttatttttc ... tacggtgcagATGGGTAAAGATATTGTATCATTCTTGGCCTGGGCAGCTGAACCAGAAATG
EST: ATGATGAAGCTGTTGAGTATGAAGATGGTGTCCCCGCCACAGAGGCACAG ATGGGTAAAGATATTGTATCATTCTTGGCCTGGGCAGCTGAACCAGAAATGEST: gi|125269284|gb|EL283369.1|EL283369
genomic: ATGATGAAGCTGTTGAGTATGAAGATGGTGTCCCCGCCACAGAGGCACAGgttatttttc ... tacggtgcagATGGGTAAAGATATTGTATCATTCTTGGCCTGGGCAGCTGAACCAGAAATG
EST: AGTATGAAGATGGTGTCCCCGCCACAGAGGCACAG ATGGGTAAAGATATTGTATCATTCTTGGCCTGGGCAGCTGAACCAGAAATGEST: gi|125217631|gb|EL231714.1|EL231714
genomic: AGTATGAAGATGGTGTCCCCGCCACAGAGGCACAGgttatttttc ... tacggtgcagATGGGTAAAGATATTGTATCATTCTTGGCCTGGGCAGCTGAACCAGAAATG
EST: CCACAGAGGCACAG ATGGGTAAAGATATTGTATCATTCTTGGCCTGGGCAGCTGAACCAGAAATGEST: gi|124911635|gb|EH985715.1|EH985715
genomic: CCACAGAGGCACAGgttatttttc ... tacggtgcagATGGGTAAAGATATTGTATCATTCTTGGCCTGGGCAGCTGAACCAGAAATG
EST: ATGATGAAGCTGTTGAGTATGAAGATGGTGTCCCCGCCACAGAGGCACAG ATGGGTAAAGATATTGTATCATTCTTG
genomic: ATGATGAAGCTGTTGAGTATGAAGATGGTGTCCCCGCCACAGAGGCACAGgttatttttc ... tacggtgcagATGGGTAAAGATATTGTATCATTCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACAATCCTTATTTCCCTGGGGGAGCAATTGCTATGCCGAAAATGCTCAATGATGAAGCTGTTGAGTATGAAGATGGTGTCCCCGCCACAGAGGCACAGgttatttttcctccacttaaaatataagaacataaatctttatgccttatggtactgtcctttctcagtgtcatgatataaactttactttacggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG