Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCATGGATGTCATATCTGGTTCTGGTAACATCCAAGCCGACATGGAAAGGTTTTGTGCTGAGTTTGGTCCGTTTCTTCATGATAATCATAAGTTTCTGgtaaacaaagactttaaaaacttttgagtctttacactttcttcaatttcatcacacaggctttgattattttgttcttgttttctttttggcag

Basic information

species Arabidopsis thaliana
transcript AT2G33470.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080333|gb|DR376090.1|DR376090
EST:     GGTTTTGTGCTGAGTTTGGTCCGTTTCTTCATGATAATCATAAGTTTCTG                         GCTAGCGTCGGTATGGATGACATGAAAGCTTCTTAAGTCATCATATGATTA
genomic: GGTTTTGTGCTGAGTTTGGTCCGTTTCTTCATGATAATCATAAGTTTCTGgtaaacaaag ... tttttggcagGCTAGCGTCGGTATGGATGACATGAAAGCTTCTTAAGTCATCATATGATTA
EST: gi|164072273|gb|ES177946.1|ES177946
EST:     GTTTTGTGCTGAGTTTGGTCCGTTTCTTCATGATAATCATAAAGTTTCTG                         GCTAGCGTCGGCATGGAT
genomic: GTTTTGTGCTGAGTTTGGTCCGTTTCTTCATGATAATCATAA-GTTTCTGgtaaacaaag ... tttttggcagGCTAGCGTCGGTATGGAT
EST: gi|164116448|gb|EL991149.1|EL991149
EST:     GGTCCGTTTCTTCATGATAATCATAAGTTTCTG                         GCTAGCGTCGGCATGGATGACATGAAAGCTTCTTAAGTCATCATATGATTA
genomic: GGTCCGTTTCTTCATGATAATCATAAGTTTCTGgtaaacaaag ... tttttggcagGCTAGCGTCGGTATGGATGACATGAAAGCTTCTTAAGTCATCATATGATTA
EST: gi|164213236|gb|ES086489.1|ES086489
EST:     GGTTTTGTGCTGAGTTTGGTCCGTTTCTTCATGATAATCATAAGTTTCTG                         GCTAGCGTCGGCAAGGATGACATGAAAGCTTC
genomic: GGTTTTGTGCTGAGTTTGGTCCGTTTCTTCATGATAATCATAAGTTTCTGgtaaacaaag ... tttttggcagGCTAGCGTCGGTATGGATGACATGAAAGCTTC
EST: gi|86077274|gb|DR373031.1|DR373031
EST:     GGTTTTGTGCTGAGTTTGGTCCGTTTCTTCATGATAATCATAAGTTTCTG                         GCTAGCGTCGGTATGGATGACATGAAAGCTTCTTAAGTCATCATATGATTA
genomic: GGTTTTGTGCTGAGTTTGGTCCGTTTCTTCATGATAATCATAAGTTTCTGgtaaacaaag ... tttttggcagGCTAGCGTCGGTATGGATGACATGAAAGCTTCTTAAGTCATCATATGATTA
EST: gi|19742507|gb|AU227860.1|AU227860
EST:     GTTTTGTGCTGAGGTTTGGTCCGTTTCTTCATGATAATCATAAGTTTCTG                         GCTAGCGTCGGTATGGATGACATGAAAGCTTCTTAAGTCATCATATGATTA
genomic: GTTTTGTGCTGA-GTTTGGTCCGTTTCTTCATGATAATCATAAGTTTCTGgtaaacaaag ... tttttggcagGCTAGCGTCGGTATGGATGACATGAAAGCTTCTTAAGTCATCATATGATTA
EST: gi|164182048|gb|ES177012.1|ES177012
EST:     GGTTTTGTGCTGAGTTTGGTCCGTTTCTTCATGATAATCATAAGTTTCTG                         GCTAGCGTCGGCATGGATGACATGAAAG
genomic: GGTTTTGTGCTGAGTTTGGTCCGTTTCTTCATGATAATCATAAGTTTCTGgtaaacaaag ... tttttggcagGCTAGCGTCGGTATGGATGACATGAAAG
EST: gi|125195604|gb|EL210558.1|EL210558
EST:     TTTGGTCCGTTTCTTCATGATAATCATAAGTTTCTG                         GCTAGCGTCGGTATGGATGACATGAAAGCTTCTTAAGTCATCATATGATTA
genomic: TTTGGTCCGTTTCTTCATGATAATCATAAGTTTCTGgtaaacaaag ... tttttggcagGCTAGCGTCGGTATGGATGACATGAAAGCTTCTTAAGTCATCATATGATTA