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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACACATCAGGCTACAGCTTTACATGTGATTTGACAGACAACATTGCTGCTCCATGGCCATCTTCATCGTCAATGTCTTCTTTGTCTCTATGTGCTCCTGgtaatcacttctctctctacctgttctcttcttactcattgttggagcttccagaaaactaaaaagtttaaattgcaaaaaaagttttgctttatcttattcaattttattttaaatatgcag

Basic information

species Arabidopsis thaliana
transcript AT2G30700.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G30700.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os10g38980.3 (Oryza sativa), 5'ss of exon 6
AACACATCAGGCTACAGCTTTACATGTGATTTGACAGACAACATTGCTGCTCCATGGCCATCTTCATCGTCAATGTCTTCTTTGTCTCTATGTGCTCCTGgtaatcacttctctctctacctgttctcttcttactcattgttggagcttccagaaaactaaaaagtttaaattgcaaaaaaagttttgctttatcttattcaattttattttaaatatgcag
||  |  | |||   || ||||||||||||||||  ||||||||||| || ||||||||||| ||||| ||  |    || ||||| || |||||||| |||||                  | |  | | | |      |||      |  | |||||    |  ||   |   || |||  |   || |    ||  ||   ||| |              
AATGCTACGGGCATTAGTTTTACATGTGATTTGAGTGACAACATTGCAGCGCCATGGCCATCATCATCATCTGTTCAATCCTTGTCACTTTGTGCTCCAGgtaa------------------ggtgacatttcag-----gtttagcactagaaaaaacagtgagcttcgtacaacacaaattgacatgatacccctcctttggtttcag-------------

upper sequence: AT2G30700.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G162251_T02 (Zea mays), 5'ss of exon 5
AACACATCAGGCTACAGCTTTACATGTGATTTGACAGACAACATTGCTGCTCCATGGCCATCTTCATCGTCAATGTCTTCTTTGTCTCTATGTGCTCCTGgtaatcacttctctctctacctgttctcttcttactcattgttggagcttccagaaaactaaaaag------------tttaa---attgcaaaaaaagttttgctttatcttattca-attttattttaaatatgcag
||| |  |||||   ||||||||||| |||||||  ||||| ||||| || ||||||||||| ||||| ||  |    || ||||| || |||||||| |||||   |     |    |  ||          ||       |  |  || |  || |  || | |            |||||    |||   |  |  |||||  | |||  |||   ||  | ||||  ||      
AACGCTACAGGCATTAGCTTTACATGCGATTTGAGTGACAATATTGCAGCACCATGGCCATCCTCATCTTCTGTCCAATCATTGTCACTTTGTGCTCCAGgtaagagcaggcattctaatttgggtcacaaaaacaatacactacaattttcgaaataacaacatgattctcactatttttaacatgttgagtactagtttttgtctaatcacattggcatcctcttttggattcag--

upper sequence: AT2G30700.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA12G01200.1 (Glycine max), 5'ss of exon 6
AACACATCAGGCTACAGCTTTACATGTGATTTGACAGACAACATTGCTGCTCCATGGCCATCTTCATCGTCAATGTCT---TCTTTGTCTCTATGTGCTCCTGgtaatcactt---ctctctctacctgttctcttc-ttactcattgttggagcttccagaaaactaaaaagtttaaattgcaaaaaaagttttgc-tttatcttattcaattttattttaaatat-gcag
    |||||||||  |||||||||||||||||||  || ||||||||||| || ||||| |||||||| ||    | |   ||| |||| || ||||| |||||||     ||   |    |     | |  |  ||  | || | | ||  |  | |  | |   |   |   | | | | ||| | |   ||||| |||   | | |    | ||||||   | | ||||
---TCATCAGGCTTTAGCTTTACATGTGATTTGAGTGATAACATTGCTGCACCCTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTGgtatgtgtttggacaaagttggtttctcttgatcgctgcttacttttttaattcc--ggatgttggtattatgatagtacaatatactgtttgcatttgcttgacttgtctctatttttttttttgcag

upper sequence: AT2G30700.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA09G36130.1 (Glycine max), 5'ss of exon 5
AACACATCAGGCTACAGCTTTACATGTGATTTGACAGACAACATTGCTGCTCCATGGCCATCTTCATCGTCAATGTCT---TCTTTGTCTCTATGTGCTCCTGgtaatcacttctctctctacctgttctcttc-ttactcattgttggagct-tccagaaaactaaaaagtttaaattgcaaaaaaagttttgc-tttatcttattcaattttattttaaatatgcag
    |||||||||  |||||||||||||||||||  || ||||||||||| || ||||| |||||||| ||    | |   ||| |||| || ||||| |||||||     ||       |     |||||||  |  ||  ||  |     | | ||| |   |   |   | | ||| ||||| |   ||||| | |   | | ||   | | | ||   | | |||
---TCATCAGGCTTTAGCTTTACATGTGATTTGAGTGATAACATTGCTGCGCCCTGGCCTTCTTCATCATCTTCATTTGCATCTATGTCACTCTGTGCACCTGgtatgtgtttggacaaatttgctttctcttgatcgctgcttactttttttattcaggatgttggtattatgatattacaaaatactgtttgcatatgcttaactcttgtctctatttttttttcag

upper sequence: AT2G30700.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv05s0094g00050.t01 (Vitis vinifera), 5'ss of exon 4
AACACATCAGGCTACAGCTTTACATGTGATTTGACAGACAACATTGCTGCTCCATGGCCATCTTCATCGTCAATGTCTTCTTTGTCTCTATGTGCTCCTGgtaatcacttctct-----ctctacctgttc-tcttcttactcattgttggagct--tccagaaaactaaaaagtttaaattgcaaaa----------aaagttttgcttta---------tcttattcaattttattttaaatatgcag
||  || |||||| ||||||||| ||||| ||||  || || ||||| ||||||||||| || ||  | ||||| || || |||||||| |||||||| |||||    ||  |         |   ||||| | | || | |  |||||  |     || |  ||||| |    ||| |  |   ||           | |  |||| || |         ||||| | |    |  |  |||| |||||
AATTCAACAGGCTTCAGCTTTACGTGTGACTTGAGTGATAATATTGCAGCTCCATGGCCTTCATCGACCTCAATTTCGTCCTTGTCTCTTTGTGCTCCGGgtaactgattgacaaagaatcatttttgttcatttcctcatttgttgttatattagatcaaataaacttatggtttttatctttgaagtgctatcattacaagtttgtttcaatgtacatttcttactgatcacttatcaaaatttgcag