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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGACTATGTTGATGGATATGTTTTATGGTGCTACTGATGGGATCATTAGACATAGACAACGGTTTCACTTTCATGAGgtgagtgagcctttagcggttcttctttcaaattaattcaaactcaatatattttccatttctttctttgtag

Basic information

species Arabidopsis thaliana
transcript AT2G25530.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G25530.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv04s0008g05270.t01 (Vitis vinifera), 5'ss of exon 5
GCAAGACTATGTTGATGGATATGTTTTATGGTGCTACTGATGGGATCATTAGACATAGACAACGGTTTCACTTTCATGAGgtgag-------tgagcctttagcggttcttctttcaaattaattcaaactcaatatattttccatttctttctttgtag--------------------
| ||||| ||| | ||||||||||||||| |||||||||| || ||  ||| |||| ||  | |||||||||||||||||||||        | |  ||||    | | | |||  || |   || |   |||   |  |    ||    |||| ||| |                    
GAAAGACAATGCTTATGGATATGTTTTATAGTGCTACTGAAGGAATTGTTAAACATCGAAGAAGGTTTCACTTTCATGAGgtgaaaattagtttacgctttgattgatatccttgaaattatttttatggtcacactcataaaaatgaacttctatgttggtttgtgttattaaggaaat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86057373|gb|DR353130.1|DR353130
EST:     ACTGATGGGATCATTAGACATAGACAACGGTTTCACTTTCATGAG                         GCTATGCTGAAGATAAATGAACAAATGCACAAGTATTGGAAGGAGAATGGT
genomic: ACTGATGGGATCATTAGACATAGACAACGGTTTCACTTTCATGAGgtgagtgagc ... ttctttgtagGCTATGCTGAAGATAAATGAACAAATGCACAAGTATTGGAAGGAGAATGGT