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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGTGGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGTGTGATTGCTTCTAATCCTAAGgtagtattttttatttcattagattgtagttcatgattcttgatctctttatctgtctcctgtcaccgattcgatagtaaattaggattcatcggtattccactgtggagaataaatgttagaaacttttcatttcag

Basic information

species Arabidopsis thaliana
transcript AT2G18510.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G18510.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G102639_T02 (Zea mays), 5'ss of exon 4
GATGTGGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGTGTGATTGCTTCTAATCCTAAGgtagtattttttatttcattagattgtagttcatgattcttg-atctctttatctgtctcctgtcaccgattcgatagtaaattaggattcatcggtattccactgtggagaataaatgttagaaacttttcatttcag
||||| |||||||||||| | |||||||| |||||||||||||| |||||||   |||||||||||||   | ||   |       |  ||    ||||||| ||||| |    | |||  || | ||||   |   | |||  || |  ||     |  ||    |                                      
GATGTTGATGAGAAGCTCCTCTATGATACCTTCAGTGCATTTGGAGTGATTGTAACTAATCCTAAGgtgacagttgacacacagcaacttttatcttcatgaatcttgcaaagttatattggtttgctgttttctgct-gattatatagcagc-caaactggcgaaca-------------------------------------

upper sequence: AT2G18510.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G170699_T01 (Zea mays), 5'ss of exon 6
GATGTGGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGTGTGATTGCTTCTAATCCTAAGgtagtattttttatttcattagattgtagttcatgattcttgatctctttat-ctgtctcctgtcaccgattcgatagtaaattaggattcatcggtattccactgtggagaataaatgttagaaacttttcatttcag
||||| ||||| |||||| | |||||||| |||||||||||||| |||||||   |||||||||||||          |  |  |    |  |   |||||     | || |   | |  ||| | |||| |  |  ||     |       |||     |   ||||                                     
GATGTTGATGAAAAGCTCCTTTATGATACCTTCAGTGCATTTGGAGTGATTGTGACTAATCCTAAGgtgacgcacgacaacttttatcttcatgaatcatgccaagttatattgatttgttgttttctgttatgg--tcagcgtttggggctgatgttatgtggttcc-------------------------------------

upper sequence: AT2G18510.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA09G00310.1 (Glycine max), 5'ss of exon 6
GATGTGGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGTGTGATTGCTTCTAATCCTAAGgtagtattttttatttcattagattgtagttcatgattcttgatctctttatctgtctcctgtcaccgattcgatagtaaattaggattcatcggtattccactgtggagaataaatgttagaaacttttcatttcag
||||| |||||||||||||||||||| ||||||||||||||||| || |||| | ||||||| |||||    |||| | ||  | ||  ||  | |  ||      | || || | || | | | |       |   |  ||   |  ||| |    | | || | |  |                                  
GATGTAGATGAGAAGCTCTTGTATGACACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGgt----ttttctcttcaaatatctttcattatata---tctaatttcatcatgtttgtgccacttatgtaacagtatccagctagtagcagttgctaatacttttca-------------------------------

upper sequence: AT2G18510.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA12G36950.1 (Glycine max), 5'ss of exon 6
GATGTGGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGTGTGATTGCTTCTAATCCTAAGgtagtattttttatttcattagattgtagttcatgattcttgatctctttatctgtctcctgtcaccgattcgatagtaaattaggattcatcggtattccactgtggagaataaatgttagaaacttttcatttcag
||||| || ||||||||||||||||||||||||||||||||||| || |||| | ||||||| |||||    |||| | ||| | ||   | ||  | ||  ||| | || | | | ||  |    |  ||       | |||||         | ||   | |    || ||                               
GATGTAGACGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGgt----ttttctctttaaatattatatatctaat--ttcatcatgtttgtgtcacttaagtaacagtatccagctagtag-cagttgctaatacttttcatgctttg-------------------------------

upper sequence: AT2G18510.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv04s0023g01470.t01 (Vitis vinifera), 5'ss of exon 6
GATGTGGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGTGTGATTGCTTCTAATCCTAAGgtagtattttttatttcattagattgtagttcatgattcttgatctctttatctgtctcctgtcaccgattcgatagtaaattaggattcatcggtattcc-actgtggagaataaatgttagaaacttttcatttcag
|||||||||||||| ||  ||||||||||||||||||||||||| || ||||   | ||||| |||||      | |  ||| |||      |  || |  ||     || |    || | | | |||| |     | ||     |||| | ||   ||   || || ||  |                                
GATGTGGATGAGAAACTTCTGTATGATACTTTCAGTGCATTTGGAGTCATTGTCACAAATCCCAAGgtgacgcctct--tttgattttcccttttttgagaat-----atatacacatatattttctgttata---tggaaccagaattggaatctctccccatccccaccctaac-----------------------------

upper sequence: AT2G18510.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S70_254V6.1 (Physcomitrella patens), 5'ss of exon 6
GATGTGGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGTGTGATTGCTTCTAATCCTAAGgtagtattttttatttcattagattgtagttcatgattcttgatctctttatctgt---ctcctgtcaccgattcgatagt----aaattagg-attcatc-ggtattccactgtggagaataaatgt--tagaaacttttcatttcag----------
|||||||||||||| || ||||| |||||||||||||| ||||| ||||| |   | || ||||||||| |  || | || |        ||  | |   |||   |  |||       |||   ||||  | |   |||     ||    | | || | ||| |||  ||| |    |  ||| || ||| ||  |    | |    ||||  |          
GATGTGGATGAGAAACTATTGTACGATACTTTCAGTGCCTTTGGCGTGATAGTCACAAACCCTAAGgta-tggttatcatcttgcgtttgtgggggtttggatgtgtagtctgcgcgcttgttcgctcccctaagtaattttgaggtttttagactatgtatttatccagtaataagataaggataaaaaacgtactgccgattcaaaattttggtggaattcag