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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCAAGAATTGGGGAGGGAATATTGTTGGATCATGGAACTGGAGTGGTCATTGGTGAGACCGCTGTGATAGGCAACGGTGTCTCGATCTTACATgtaagcgtctcttctccaaaccattgcctgtaaattcaataccgagatcatgattttcctttcagtttttcaaggctacttgagttttcactgtcacag

Basic information

species Arabidopsis thaliana
transcript AT2G17640.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G17640.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os03g04140.1 (Oryza sativa), 5'ss of exon 6
CGGCAAGAATTGGGGAGGGAATATTGTTGGATCATGGAACTGGAGTGGTCATTGGTGAGACCGCTGTGATAGGCAACGGTGTCTCGATCTTACATgtaagcgtctcttctccaaacc-attgcctgtaaattcaataccgagatcatgattttcctttcagtttt--tcaaggctacttgagttttcactgtcacag
|||| |||||||| |||||||||||||||||||||||||| ||  | || |||||||| || ||  |  | || ||| | || ||  |  | || ||   |  |    |||         |  ||| ||| |  | |   |     |  || |   | || ||||  |   |   |||  |          | |   
CGGCCAGAATTGGAGAGGGAATATTGTTGGATCATGGAACGGGTCTAGTTATTGGTGAAACTGCCATTGTTGGAAACTGGGTTTCATTAATGCAGgtgcccagcataactcagtttttgctagctgcaaaattcaaaataaagcagtacttctagatgcaattttagttttgagcactacaacaggtgtgctgat--

upper sequence: AT2G17640.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G048740_T03 (Zea mays), 5'ss of exon 6
CGGCAAGAATTGGGGAGGGAATATTGTTGGATCATGGAACTGGAGTGGTCATTGGTGAGACCGCTGTGATAGGCAACGGTGTCTCGATCTTACATgtaagcgtctct-tctccaaaccattgcctgtaaattcaataccgagatcatgattttcctttcagtttttca------aggctacttgagttttcactgtcacag
| || | |||||| |||||||||||||||||||||||||| ||  | ||||||||||| || |||||  | || ||| | || ||  |  | || || |  |  |    |  |   |  || ||| |||    || |||   ||     ||| || |    ||||| |      |   | | ||  | ||   |||   ||
CTGCCAAAATTGGCGAGGGAATATTGTTGGATCATGGAACAGGTCTAGTCATTGGTGAAACTGCTGTAGTTGGAAACTGGGTTTCATTAATGCAGgtgaatgcataaaccaaccctctttttcctttaagg--aacaccacaatt----tttcccgtatgattttttattacacaatttgcatgtttgtttcttgtttgag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86074953|gb|DR370710.1|DR370710
EST:     TGGTCATTGGTGAGACCGCTGTGATAGGCAACGGTGTCTCGATCTTACAT                         GGTGTGACTTTAGGAGGAACCGGAAAGGAAACTGGCGATCGCCACCCAAAG
genomic: TGGTCATTGGTGAGACCGCTGTGATAGGCAACGGTGTCTCGATCTTACATgtaagcgtct ... actgtcacagGGTGTGACTTTAGGAGGAACCGGAAAGGAAACTGGCGATCGCCACCCAAAG
EST: gi|124819962|gb|EH904828.1|EH904828
EST:     TGGTCATTGGTGAGACCGCTGTGATAGGCAACGGTGTCTCGATCTTACAT                         GGTGTGACTTTAGGAGGAACCGGAAAGGAAACTG
genomic: TGGTCATTGGTGAGACCGCTGTGATAGGCAACGGTGTCTCGATCTTACATgtaagcgtct ... actgtcacagGGTGTGACTTTAGGAGGAACCGGAAAGGAAACTG