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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATAAAGACACGGGGATAAGCTTTACTTGTGACCTCAATGACAACATTCCCGCTCCGTGGCCTTCATCTTCTCTATCCTCAGCCTCTACCTGTAAAAAACgtgcgtggtttatcgtatttatcttcttgatttccgacatttttgcctctctttttttcttaacttgcatacgtttttctgtattgttcttttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G61900.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G61900.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv10s0116g01850.t01 (Vitis vinifera), 5'ss of exon 6
GATAAAGACACGGGGATAAGCTTTACTTGTGACCTCAATGACAACATTCCCGCTCCGTGGCCTTCATCTTCTCTATCCTCAGCCTCTACCTGTAAAAAACgtgcg--tggtttatcgtatttatcttcttgatttccgacatttttgcctctctttttttcttaacttgca-tacgtttttctgtat----tgttcttttgcag---------------------------------------------------
|| ||     | |||||||| || | |||||| || |||||||||||||| ||||| |||||||| || |||| ||   |||| ||  | || || ||| ||  |  |  | | |    ||| |    ||   |   |    | |||   |  ||| ||   | |     | |||  ||| ||  |     || |  ||| |                                                     
GACAAGTCTTCAGGGATAAGTTTCATTTGTGATCTGAATGACAACATTCCAGCTCCTTGGCCTTCTTCATCTCAATTACCAGCTTCATCATGCAATAAAAgtatggcttatctgtaacttttgttcgtttagatgaggttcctgttgttaccttttcttctatgagcaaaactactctttgctaaagaaagtgattatttccttctttcctgtcacatttcttcttgatttatgtctgaacttgttgaattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164157475|gb|ES149803.1|ES149803
EST:     CTGTAAAAAAC                         CTGTTAGAATTCCTGCTCTTCCAGCTGCTGCCTCCTCGCAACCTC
genomic: CTGTAAAAAACgtgcgtggtt ... tcttttgcagCTGTTAGAATTCCTGCTCTTCCAGCTGCTGCCTCCTCGCAACCTC
EST: gi|124772829|gb|EH862958.1|EH862958
EST:     CGCTCCGTGGCCTTCATCTTCTCTATCCTCAGCCTCTACCTGTAAAAAAC                         CTGTTAGAATTCCTGCTCTTCCAGCTGCTGCCTCCTCG
genomic: CGCTCCGTGGCCTTCATCTTCTCTATCCTCAGCCTCTACCTGTAAAAAACgtgcgtggtt ... tcttttgcagCTGTTAGAATTCCTGCTCTTCCAGCTGCTGCCTCCTCG
EST: gi|164098735|gb|ES137116.1|ES137116
EST:     CGCTCCGTGGCCTTCATCTTCTCTATCCTCAGCCTCTACCTGTAAAAAAC                         CTGTTAGAATTCCTGCTCTTCCAGCTGCTGCCTCCTCGCAACCTCGTCTCC
genomic: CGCTCCGTGGCCTTCATCTTCTCTATCCTCAGCCTCTACCTGTAAAAAACgtgcgtggtt ... tcttttgcagCTGTTAGAATTCCTGCTCTTCCAGCTGCTGCCTCCTCGCAACCTCGTCTCC