Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCAGGGTCTTCATCGCTGGCTATGTGTGGATGACCGGTTTTGGGAACTTCTCTTATTACTATATCCGAAAGGATTTCTCCCTTGCACGATTCACTCAGgtcagatcaactattttcgatcaccatagtttgttcagtttaccatgtgatgttcttttagagagcactatgtctttcaaagctcaagatttttatgaaagcttttacttaatccag

Basic information

species Arabidopsis thaliana
transcript AT1G29890.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G29890.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G147351_T01 (Zea mays), 5'ss of exon 1
AATCAGGGTCTTCATCGCTGGCTATGTGTGGATGACCGGTTTTGGGAACTTCTCTTATTACTATATCCGAAAGGATTTCTCCCTTGCACGATTCACTCAGgtcagatcaactattttcgatcaccatagtttgttcagtttaccatgtgatgttcttttagagagcactatgtctttcaaagctcaagatttttatgaaagcttttactt--aatccag
|||| | || ||||| ||| ||||||| |||||||| || |||||||| ||||| ||||||||||||   || |||||     ||||| ||||  |||||||  |   |       ||      | || ||||| |  | | | |  |||  ||  | |   |       ||| |  |     | |||   |  |  ||    | |||||   || |||
AATCCGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCATATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCTCAGgt--gcctatgctacctcatcagtcttattttgtgctatgtccta-atgagtttagtctcctgtatttcttgt-taccgccttttaagcactagaccaataactatactttccatgcag

upper sequence: AT1G29890.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G370741_T01 (Zea mays), 5'ss of exon 2
AATCAGGGTCTTCATCGCTGGCTATGTGTGGATGACCGGTTTTGGGAACTTCTCTTATTACTATATCCGAAAGGATTTCTCCCTTGCACGATTCACTCAGgt-cagatcaactattttcgatcaccatagtttgttcagttt--accatgtgatgttcttttagagagcactatgtctttcaaagctcaagatttttatgaaagcttttacttaatccag
|||| | || ||||| ||| ||||||| |||||||| || |||||||| ||||| ||||||||||||   || |||||     ||||| ||||  | ||||| |  ||      |  ||  ||   ||  | || |  ||    |  |  | |   || | ||        ||   | ||  |||| | |||    ||   |  ||||      || |||
AATCCGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCCTATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCGCAGgtgcctatgctacctcatcagtc-ttattttctgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttttaagcactagaccaataactatactttcc----atgcag

upper sequence: AT1G29890.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G458538_T01 (Zea mays), 5'ss of exon 2
AATCAGGGTCTTCATCGCTGGCTATGTGTGGATGACCGGTTTTGGGAACTTCTCTTATTACTATATCCGAAAGGATTTCTCCCTTGCACGATTCACTCAGgtcagatcaactattttcgatcaccatagtttgttcagtttaccatgtgatgttcttttagagagcactatgtctttcaaagctcaagatttttatgaaagcttttactt--aatccag
|||| | || ||||| ||| ||||||| |||||||| || |||||||| ||||| ||||||||||||   || |||||     ||||| ||||  |||||||  |   |       ||      | || ||||| |  | | | |  |||  ||  | |   |       ||| |  |     | |||   |  |  ||    | |||||   || |||
AATCCGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCATATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCTCAGgt--gcctatgctacctcatcagtcttattttgtgctatgtccta-atgagtttagtctcctgtatttcttgt-taccgccttttaagcactagaacaataactatactttccatgcag

upper sequence: AT1G29890.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: AC218988.3_FGT003 (Zea mays), 5'ss of exon 2
AATCAGGGTCTTCATCGCTGGCTATGTGTGGATGACCGGTTTTGGGAACTTCTCTTATTACTATATCCGAAAGGATTTCTCCCTTGCACGATTCACTCAGgtcagatcaactattttcgatca-ccatagtttgttcagtttaccatgtgatgttcttttagagagcactatgtctttcaaagctcaagatttttatgaaagcttttactt--aatccag
|||| | || ||||| ||| ||||||| |||||||| || |||||||| ||||| ||||||||||||   || |||||     ||||| ||||  |||||||    || |   |     ||||  | || ||||| |  |   | |  |||  ||  | |   |     | ||| |  |     | |||   |  |  ||    | |||||   || |||
AATCTGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCCTATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCTCAGgt---gtctatgctacctcatcagtcttattttgtgctatgcccta-atgagtttagtctcctgtattttttgt-taccgccttttaagcactagaccaataactatactttccatgcag

upper sequence: AT1G29890.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: AC208418.3_FGT009 (Zea mays), 5'ss of exon 3
AATCAGGGTCTTCATCGCTGGCTATGTGTGGATGACCGGTTTTGGGAACTTCTCTTATTACTATATCCGAAAGGATTTCTCCCTTGCACGATTCACTCAGgtcagatcaactattttcgatca-ccatagtttgttcagtttaccatgtgatgttcttttagagagcactatgtctttcaaagctcaagatttttatgaaagcttttactt--aatccag
|||| | || ||||| ||| ||||||| |||||||| || |||||||| ||||| ||||||||||||   || |||||     ||||| ||||  |||||||    || |   |     ||||  | || ||||| |  | | | |  |||  ||  | |   |     | ||| |  |     | |||   |  |  ||    | |||||   || |||
AATCTGTGTGTTCATTGCTTGCTATGTCTGGATGACTGGATTTGGGAATTTCTCCTATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCTCAGgt---gtctatgctacctcatcagtcttattttgtgctatgtccta-atgagtttagtctcctgtattttttgt-taccgccttttaagcactagaccaataactatactttccatgcag

upper sequence: AT1G29890.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G463445_T01 (Zea mays), 5'ss of exon 2
AATCAGGGTCTTCATCGCTGGCTATGTGTGGATGACCGGTTTTGGGAACTTCTCTTATTACTATATCCGAAAGGATTTCTCCCTTGCACGATTCACTCAGgtcagatcaactattttcgatcaccatagtttgttcagtttaccatgtgatgt----tcttttagagagcactatgtctttcaaagctcaagattttta-tgaaagcttttacttaatccag
|||| | || ||||| ||| ||||||| ||||||||  | |||||||| ||||| ||||||||||||   || |||||     ||||| ||||  |||||||  |   |       ||      | || ||||| |  | | | |     | |    || | ||        ||   | ||  |||| | |||    ||   | |  ||  |  ||      
AATCCGTGTGTTCATTGCTTGCTATGTCTGGATGACTAGATTTGGGAATTTCTCCTATTACTATATCAAGAAAGATTTTAGTATTGCAAGATTTGCTCAGgt--gcctatgctacctcatcagtcttattttgtgctatgtcctaatgagtttagtctcctgtatttcttgttaccgccttttaagcactagaccaataactatactttccatgtag-----