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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTGTCGAGTCCGAACATCTCGTAACTCTCCTTGCAGTTGTTCCGAAGTATTCCCAAAAAGACTGGCTAGCATGTTATGAGACTTTGACCGATTATGTGgtaaatttgttgacttgctaggtttattgaatagaccagtggtaacactactggtttgacgtaccgtgattttaatcaatttatcctaacttgtttcag

Basic information

species Arabidopsis thaliana
transcript AT1G12840.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G12840.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G128995_T02 (Zea mays), 5'ss of exon 4
TATTGTCGAGTCCGAACATCTCGTAACTCTCCTTGCAGTTGTTCCGAAGTATTCCCAAAAAGACTGGCTAGCATGTTATGAGACT-TTGACCGATTATGTGgtaaatttgttgacttgctaggtttattgaatagaccagtggtaacactactggtttgacgtaccgtgattttaatcaatttatcctaacttgtttcag-------
|||  ||   || ||||||||||| || || |||||| ||||||| ||||| ||||||||||||||| |  || | |||||||   |||||  |||  |||||||  ||      | | |  | || |        |  ||   ||| || |    | ||| ||   |   ||  | |  |   |   ||     || |        
TATGATCACCTCGGAACATCTCGTGACACTTCTTGCAATTGTTCCCAAGTACTCCCAAAAAGACTGGTTGTCAAGCTATGAGAAAATTGACACATT-CGTGgtaaggttaaattttggttgtgcttgtctg-----cttgttagaac-ctcccaaatcgacatattttttcttataactttccttttgaagagaattgaataatgtt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124914292|gb|EH988166.1|EH988166
EST:     CTTTGACCGATTATGTG                         GTTCCTAGATCCTCGAAGAAATTGTTTGAGGATAATGAGTATGCCCTTTAC
genomic: CTTTGACCGATTATGTGgtaaatttgt ... cttgtttcagGTTCCTAGGTCCTCGAAGAAATTGTTTGAGGATAATGAGTATGCCCTTTAC
EST: gi|124747235|gb|EH837381.1|EH837381
EST:     ATTCCCAAAAAGACTGGCTAGCATGTTATGAGATTTTGACCGATTATGTG                         GTTCCTAGGTCCTCGAA
genomic: ATTCCCAAAAAGACTGGCTAGCATGTTATGAGACTTTGACCGATTATGTGgtaaatttgt ... cttgtttcagGTTCCTAGGTCCTCGAA
EST: gi|163969987|gb|ES157323.1|ES157323
EST:     GACTTTGACCGATTATGTG                         GTTCCTAGGTCCTCGAAGAAATTGTTTGAGGATAATGAGTATGCCCTTTAC
genomic: GACTTTGACCGATTATGTGgtaaatttgt ... cttgtttcagGTTCCTAGGTCCTCGAAGAAATTGTTTGAGGATAATGAGTATGCCCTTTAC
EST: gi|124766774|gb|EH856904.1|EH856904
EST:     CATGTTATGAGACTTTGACCGATTATGTG                         GTTCCTAGGTCCTCGAAGAAATTGTTTGAGGATAATGAGTATGCCCTTTAC
genomic: CATGTTATGAGACTTTGACCGATTATGTGgtaaatttgt ... cttgtttcagGTTCCTAGGTCCTCGAAGAAATTGTTTGAGGATAATGAGTATGCCCTTTAC
EST: gi|164202287|gb|ES129505.1|ES129505
EST:     ATGAGACTTTGACCGATTATGTG                         GTTCCTAGGTCCTCGAAGAAATTGTTTGAGGATAATGAGTANTGCCCTTTA
genomic: ATGAGACTTTGACCGATTATGTGgtaaatttgt ... cttgtttcagGTTCCTAGGTCCTCGAAGAAATTGTTTGAGGATAATGAGTA-TGCCCTTTA