Sequence
atgc intronic sequence ATGC exonic sequenceATACATTTTATGGAGGATGGTACATTTGAGATATACAGTCGAAATGCTGAAAGAAACACTGGGAAGTACCCGGATGTTGCTCTTGCGTTATCAAGgtaaacatctggtgtaactggttgaaaacattagagattcaatctttctactgaagttagtgaaacatctcaatgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G08130.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G08130.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G071304_T01 (Zea mays), 5'ss of exon 6
ATACATTTTATGGAGGATGGTACATTTGAGATATACAGTCGAAATGCTGAAAGAAACACTGGGAAGTACCCGGATGTTGCTCTTGCGTTATCAAGgtaaacatc-tggtgtaactggttgaaaacattagagattcaatctttctactgaagt--tagtgaaacatctcaatgcag--------------------
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ATACATTGCATGGAGGATGGTTCAGTAGAGATTTATAGTCGCAATGCTGAAAGAAACACCGGAAAGTATCCAGATGTTGTTGATGCAGTTTCTAGgtattctccattttataatttcacttac-caatgcatttctgaatctccaactgaagaagcactgggagcagttaatgctagttattatatccttgagtat
upper sequence: AT1G08130.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S223_54V6.2 (Physcomitrella patens), 5'ss of exon 8
ATACATTTTATGGAGGATGGTACATTTGAGATATACAGTCGAAATGCTGAAAGAAACACTGGGAAGTACCCGGATGTTGCTCTTGCGTTATCAAGgtaaac---atctggtgtaactggttga-aaacattagagattcaatctt--tctactgaagttagtgaaacat--ctcaatgcag--------------
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GTACATTATCTGCAAGGGGGCACAATTGAGATATACAGTAGAAATGCTGAACACAACACTGGGAAGTTTCCTGACATCGTTGCAGCAATGCCCAGgtatatcctacccgaattaagctgtcggtgaacgatctgagtgccattgtaacttacatcaatcaataagtatttgctcgacgaggcgtatattgcatttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164173538|gb|ES208631.1|ES208631EST: CTTGCGTTATCAAG ATTAAAGAAGCCTTCTGTGAAATCTTTTATTCTGGATTGTGAAGTTGTTGC
genomic: CTTGCGTTATCAAGgtaaacatct ... ctcaatgcagATTAAAGAAGCCTTCTGTGAAATCTTTTATTCTGGATTGTGAAGTTGTTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATACATTTTATGGAGGATGGTACATTTGAGATATACAGTCGAAATGCTGAAAGAAACACTGGGAAGTACCCGGATGTTGCTCTTGCGTTATCAAGgtaaacatctggtgtaactggttgaaaacattagagattcaatctttctactgaagttagtgaaacatctcaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA