1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCATGGCTATATTCGATACTATGAGGCACATCCGGCCTGATGTGTCCACTGTTTGTGTTGGTCTAGCTGCTAGgtaaaactttcaccatcctttcactctcattatctcttgattttcttaggttccttggtaaattgataatttctcttttcaatgtggttaactgttcttg...
species | Arabidopsis thaliana |
transcript | AT1G02560.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCGGCCTGATGTGTCCACTGTTTGTGTTGGTCTAGCTGCTAG TATGGGAGCTTTTCTGCTTAGTGCTGGAAACCAAAGEST: gi|125100100|gb|EL155679.1|EL155679
genomic: CCGGCCTGATGTGTCCACTGTTTGTGTTGGTCTAGCTGCTAGgtaaaacttt ... ttatgaacagTATGGGAGCTTTTCTGCTTAGTGCTGGAA-CCAAAG
EST: ATGTGTCCACTGTTTGTGTTGGTCTAGCTGCTAG TATGGGAGCTTTTCTGCTTAGTGCTGGAACCAAAGEST: gi|125301620|gb|EL315705.1|EL315705
genomic: ATGTGTCCACTGTTTGTGTTGGTCTAGCTGCTAGgtaaaacttt ... ttatgaacagTATGGGAGCTTTTCTGCTTAGTGCTGGAACCAAAG
EST: ATGTGTCCACTGTTTGTGTTGGTCTAGCTGCTAG TATGGGAGCTTTTCTGCTTAGTGCTGGAA
genomic: ATGTGTCCACTGTTTGTGTTGGTCTAGCTGCTAGgtaaaacttt ... ttatgaacagTATGGGAGCTTTTCTGCTTAGTGCTGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATGGCTATATTCGATACTATGAGGCACATCCGGCCTGATGTGTCCACTGTTTGTGTTGGTCTAGCTGCTAGgtaaaactttcaccatcctttcactctcattatctcttgattttcttaggttccttggtaaattgataatttctcttttcaatgtggttaactgttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctttcacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcactctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctctt