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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCTCATGTTAGCAGCAGAGCCAAACTCACTGTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaaggactttgtgttaaaaatgtttgtttgttggctttcgtataacatgttttctcttgagagtttcag

Basic information

species Arabidopsis thaliana
transcript AT5G62240.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116430574|gb|EG473166.1|EG473166
EST:     GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430576|gb|EG473168.1|EG473168
EST:     GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAGGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430569|gb|EG473161.1|EG473161
EST:     GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACGG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430547|gb|EG473139.1|EG473139
EST:     TAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: TAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430546|gb|EG473138.1|EG473138
EST:     GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430548|gb|EG473140.1|EG473140
EST:     GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430549|gb|EG473141.1|EG473141
EST:     CAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: CAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430567|gb|EG473159.1|EG473159
EST:     GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430536|gb|EG473128.1|EG473128
EST:     GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430565|gb|EG473157.1|EG473157
EST:     GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430559|gb|EG473151.1|EG473151
EST:     GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430571|gb|EG473163.1|EG473163
EST:     GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430537|gb|EG473129.1|EG473129
EST:     AACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: AACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430560|gb|EG473152.1|EG473152
EST:     GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430541|gb|EG473133.1|EG473133
EST:     GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430542|gb|EG473134.1|EG473134
EST:     GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430578|gb|EG473170.1|EG473170
EST:     GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430540|gb|EG473132.1|EG473132
EST:     GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430552|gb|EG473144.1|EG473144
EST:     GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430582|gb|EG473174.1|EG473174
EST:     GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430551|gb|EG473143.1|EG473143
EST:     GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430556|gb|EG473148.1|EG473148
EST:     GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430558|gb|EG473150.1|EG473150
EST:     GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430585|gb|EG473177.1|EG473177
EST:     GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430544|gb|EG473136.1|EG473136
EST:     GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430554|gb|EG473146.1|EG473146
EST:     GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430580|gb|EG473172.1|EG473172
EST:     GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
EST: gi|116430538|gb|EG473130.1|EG473130
EST:     GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAG                         GTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG
genomic: GTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaagg ... agagtttcagGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGGCTCATGTTAGCAGCAGAGCCAAACTCACTGTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGAAAGACACAGgtaattaaggactttgtgttaaaaatgtttgtttgttggctttcgtataacatgttttctcttgagagtttcag

- - - - - - - - - - - - - - - - - - -  AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG