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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGATGTTGAAAATCCGTGTGTGGTAATGAGTCAAGACAAAAGCAGGGAGTTCTTACATTCTGGAAATGACAAAGATAAATTCAAGgtatgtcacgtgaattgatatatatatcaaagtcaaccatgttgttattatggctgaaaattttcgctatctag

Basic information

species Arabidopsis thaliana
transcript AT5G61460.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G61460.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G025340_T02 (Zea mays), 5'ss of exon 5
ATTGATGTTGAAAATCCGTGTGTGGTAATGAGTCAAGACAAAAGCAGGGAGTTCTTACATTCTGGAAATGACAAAGATAAATTCAAGgtat------gtcacgtgaattgatatatatatcaaagtca---accatgttgttat-tatggctgaaaattttcg--ctatctag--------------
||||| |||||||| || |||||  | |||||||||||||||||||| ||||| |||||||| ||||||||||| ||||| ||||||||||         | |  |    | | | ||  |  | |||    |  |   || || |||   ||  || |        || | |              
ATTGAAGTTGAAAACCCTTGTGTAATTATGAGTCAAGACAAAAGCAGAGAGTTTTTACATTCAGGAAATGACAAGGATAAGTTCAAGgtattgaaaaactatgcaatggaacacaaatgccttattcatgtgcttttcagtcatctattattgtcaaatgcaaattcatgtggctgtcagtggtctg

upper sequence: AT5G61460.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv16s0013g00490.t01 (Vitis vinifera), 5'ss of exon 5
ATTGATGTTGAAAATCCGTGTGTGGTAATGAGTCAAGACAAAAGCAGGGAGTTCTTACATTCTGGAAATGACAAAGATAAATTCAAGgtatgtcacgtgaattgatat---atatatcaaagtcaaccatgttgttattatggctgaaaattttcgctatc-tag-----------
||||||||||||||||| |||||| |||||||||||||||||||||| || || || ||||| || ||||||||||||||||||||||||     | |||||  | ||   || | |  |       ||   ||| | |||  || |    |  | ||| |  ||           
ATTGATGTTGAAAATCCATGTGTGATAATGAGTCAAGACAAAAGCAGAGAATTTTTGCATTCAGGGAATGACAAAGATAAATTCAAGgtaatgtgcatgaatgaacattgcatgtgtgcagcatgcacactatgtcaatataccttagctatgacactaacacagtatttactcag

upper sequence: AT5G61460.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ36741 (Selaginella moellendorffii), 5'ss of exon 5
ATTGATGTTGAAAATCCGTGTGTGGTAATGAGTCAAGACAAAAGCAGGGAGTTCTTACATTCTGGAAATGACAAAGATAAATTCAAGgtatgtcacgtgaattgatatatatatcaaagtcaaccatgttgttattatggctgaaaattttcgctatctag
|| ||||| |||||||| |||||| | ||||| |||||||| ||| | |||||| | ||||| ||||||||||| || || || ||||||  |  |   |||   | |     |||      |||   ||||| ||  |||  |                 
ATAGATGTCGAAAATCCTTGTGTGATCATGAGCCAAGACAAGAGCCGCGAGTTCCTGCATTCCGGAAATGACAAGGAAAAGTTTAAGgtacttggctctaatccttgttgggctca----tgacctgcttgttttttgggcatag----------------

upper sequence: AT5G61460.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ27923 (Selaginella moellendorffii), 5'ss of exon 5
ATTGATGTTGAAAATCCGTGTGTGGTAATGAGTCAAGACAAAAGCAGGGAGTTCTTACATTCTGGAAATGACAAAGATAAATTCAAGgtatgtcacgtgaattgatatatatatcaaagtcaaccatgttgttattatggctgaaaattttcgctatctag
|| ||||| |||||||| |||||| | ||||| |||||||| ||| | |||||| | ||||| ||||||||||| || || |||||||||  |  |   |||   | |     |||      |||   ||||| ||  |||  |                 
ATAGATGTCGAAAATCCTTGTGTGATCATGAGCCAAGACAAGAGCCGCGAGTTCCTGCATTCCGGAAATGACAAGGAAAAGTTCAAGgtacttggctctaatccttgttgggctca----tgacctgcttgttttttgggcatag----------------