1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGATTGCTGCTCAAAGTATCCAGTTAGGGATCAATGATGTAGTTGTGGCGGGTGGTATGGAAAGCATGTCTAATACACCAAAATATTTGGCAGAAGCAAGgtaaaatgatgtggttttacggaatcatttggtctttttactctatgcatcattgtttcttattcggattttgatgcag
species | Arabidopsis thaliana |
transcript | AT5G48230.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGTATGGAAAGCATGTCTAATACACCAAAATTATTTGGCAGAAGCAAG GAAGGGATCTCGTTTTGGTCATGATTCTTTAGTAGATGGAATGTTGAAGGAEST: gi|125309172|gb|EL323257.1|EL323257
genomic: GGTATGGAAAGCATGTCTAATACACCAAAA-TATTTGGCAGAAGCAAGgtaaaatgat ... tttgatgcagGAAGGGATCTCGTTTTGGTCATGATTCTTTAGTAGATGGAATGTTGAAGGA
EST: GGTGGTATGGAAAGCATGTCTAATACACCAAAATATTTGGCAGAAGCAAG GAAGGGATCTCGTTTTGGTCATGATTCTTTAGTAGATGEST: gi|125283163|gb|EL297248.1|EL297248
genomic: GGTGGTATGGAAAGCATGTCTAATACACCAAAATATTTGGCAGAAGCAAGgtaaaatgat ... tttgatgcagGAAGGGATCTCGTTTTGGTCATGATTCTTTAGTAGATG
EST: TAATACACCAAAATAATTTGGCAGAAGCAAG GAAGGGATCTCGTTTTGGTCATGATTCTTTAGTAGATGGAATGTTGAAGGAEST: gi|125239399|gb|EL253484.1|EL253484
genomic: TAATACACCAAAAT-ATTTGGCAGAAGCAAGgtaaaatgat ... tttgatgcagGAAGGGATCTCGTTTTGGTCATGATTCTTTAGTAGATGGAATGTTGAAGGA
EST: GGTATGGAAAGCATGTCTAATACACCAAAATATTTGGCAGAAGCAAG GAAGGGATCTCGTTTTGGTCATGATTCTTTAGTAGATGGAATGTTGAAGGA
genomic: GGTATGGAAAGCATGTCTAATACACCAAAATATTTGGCAGAAGCAAGgtaaaatgat ... tttgatgcagGAAGGGATCTCGTTTTGGTCATGATTCTTTAGTAGATGGAATGTTGAAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATTGCTGCTCAAAGTATCCAGTTAGGGATCAATGATGTAGTTGTGGCGGGTGGTATGGAAAGCATGTCTAATACACCAAAATATTTGGCAGAAGCAAGgtaaaatgatgtggttttacggaatcatttggtctttttactctatgcatcattgtttcttattcggattttgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG