1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGCGGCAACAATTTACTCTGCTCGTACAATCAAGGTAAAGGAAGAAGAAGGTTTAAGgcaagtagcttcaaactatactcccatcggttcgggaatcaatgttcttgataggagaatttccaaaggactcatctgtttgaaattcttgttatttatatctgcag
species | Arabidopsis thaliana |
transcript | AT5G27390.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACAATTTACTCTGCTCGTACAATCAAGGTAAAGGAAGAAGAAGGTTTAAG AAATTACTACTTCTACGAGTTTGGTAGAGATGAAGAACGCATAGCTCTAGTEST: gi|86085615|gb|DR381374.1|DR381374
genomic: ACAATTTACTCTGCTCGTACAATCAAGGTAAAGGAAGAAGAAGGTTTAAGgcaagtagct ... atatctgcagAAATTACTACTTCTACGAGTTTGGTAGAGATGAAGAACGCATAGCTCTAGT
EST: ACAATTTACTCTGCTCGTACAATCAAGGTAAAGGAAGAAGAAGGTTTAAG AAATTACTACTTCTACGAGTTTGGTAGAGATGAAGAACGCATAGCTCTAGTEST: gi|19875913|gb|AU236744.1|AU236744
genomic: ACAATTTACTCTGCTCGTACAATCAAGGTAAAGGAAGAAGAAGGTTTAAGgcaagtagct ... atatctgcagAAATTACTACTTCTACGAGTTTGGTAGAGATGAAGAACGCATAGCTCTAGT
EST: ACAATT-ACTCTGCTCGTACAATCAAGGGAAAGGAAGAAGAAGGTT-AAG AAATTACTACTTTCTACGAGTTTGGTAGAGATGAAAAACCCATAGCTCEST: gi|19799686|gb|AU230976.1|AU230976
genomic: ACAATTTACTCTGCTCGTACAATCAAGGTAAAGGAAGAAGAAGGTTTAAGgcaagtagct ... atatctgcagAAATTACTACTT-CTACGAGTTTGGTAGAGATGAAGAACGCATAGCTC
EST: CAATTTACTCTGCTCGTACAATCAAGGTAAAGGAAGAAGAAGGGTTTAAG AAATTACTACTTCTACGATTTTGGTAGAGATGAAGAACGCATAGCTCTATEST: gi|164168769|gb|ES161094.1|ES161094
genomic: CAATTTACTCTGCTCGTACAATCAAGGTAAAGGAAGAAGAA-GGTTTAAGgcaagtagct ... atatctgcagAAATTACTACTTCTACGAGTTTGGTAGAGATGAAGAACGCATAGCTCTAG
EST: ACAATTTACTCTGCTCGTACAATCAAGGTAAAGGAAGAAGAAGGTTTAAG AAATTACTACTTCTACGAGTTTTGGTAGAGATGAAGAACGCATAGCTCTAGEST: gi|164192451|gb|ES030431.1|ES030431
genomic: ACAATTTACTCTGCTCGTACAATCAAGGTAAAGGAAGAAGAAGGTTTAAGgcaagtagct ... atatctgcagAAATTACTACTTCTACGAGTTT-GGTAGAGATGAAGAACGCATAGCTCTAG
EST: GAAGGTTTAAG AAATTACTACTTCTACGAGTTTGGTAGAGATGAAGAACGCATAGCTCTAGT
genomic: GAAGGTTTAAGgcaagtagct ... atatctgcagAAATTACTACTTCTACGAGTTTGGTAGAGATGAAGAACGCATAGCTCTAGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCGGCAACAATTTACTCTGCTCGTACAATCAAGGTAAAGGAAGAAGAAGGTTTAAGgcaagtagcttcaaactatactcccatcggttcgggaatcaatgttcttgataggagaatttccaaaggactcatctgtttgaaattcttgttatttatatctgcag
- - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - AAGAAG