1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGCTGGTGGGTGGAAAGATCGGACCACCGTGGAAGATATGGATCTCGCCGTCCGAGCAAGTCTTCGCGGCTGGAAATTTCTCTACCTCGGTGACCTTCAGgtttttatttatttactttctaatacaatatttagatagttagaacaaattaaacacacataacaaatagtaagttggtgcacaagatacttctctcatt...
species | Arabidopsis thaliana |
transcript | AT5G22740.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCCGAGCAAGTCTTCGCGGCTGGAAATTTCTCTACCTCGGTGACCTTCAG GTGAAAAGTGAGCTTCCAAGTACTTTTAGAGCCTTCCGTTTTCAGCAACATEST: gi|86052419|gb|DR348176.1|DR348176
genomic: TCCGAGCAAGTCTTCGCGGCTGGAAATTTCTCTACCTCGGTGACCTTCAGgtttttattt ... ctttgcatagGTGAAAAGTGAGCTTCCAAGTACTTTTAGAGCCTTCCGTTTTCAGCAACAT
EST: TCCGAGCAAGTCTTCGCGGCTGGAAATTTCTCTACCTCGGTGACCTTCAG GTGAAAAGTGAGCTTCCAAGTACTTTTAGAGCCTTCCGTTTTCAGCAACAT
genomic: TCCGAGCAAGTCTTCGCGGCTGGAAATTTCTCTACCTCGGTGACCTTCAGgtttttattt ... ctttgcatagGTGAAAAGTGAGCTTCCAAGTACTTTTAGAGCCTTCCGTTTTCAGCAACAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTGGTGGGTGGAAAGATCGGACCACCGTGGAAGATATGGATCTCGCCGTCCGAGCAAGTCTTCGCGGCTGGAAATTTCTCTACCTCGGTGACCTTCAGgtttttatttatttactttctaatacaatatttagatagttagaacaaattaaacacacataacaaatagtaagttggtgcacaagatacttctctcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taaacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cataacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acaagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctctc