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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCTTGAATGGATTATTTGATTGTGTGCAGCTTTTGCTTGATCTTGAGGCCAATGTTTCCGCTGTGACATTTCATTATGGAACATCAATGGATATGATTGgtctcagctttctatccgccttcttttttattgactaaaggattctttctatactgctcccaagatgacaatcttgttcttcgttaacgttgcag

Basic information

species Arabidopsis thaliana
transcript AT5G07270.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G07270.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA16G32090.1 (Glycine max), 5'ss of exon 5
GCCTTGAATGGATTATTTGATTGTGTGCAGCTTTTGCTTGATCTTGAGGCCAATGTTTCCGCTGTGACATTTCATTATGGAACATCAATGGATATGATTGgtctcagctttctatccgccttcttttttattgactaaaggattctttctatactgctcccaagatgacaatcttgttcttcgttaacgttgcag
|| || |||||    ||||||||||| || ||  | ||||||||| | || ||||| || |||| ||||||||||||||| |||||||||||| | || |||   ||  || | |        |||  |    | |  | | || |||   |  |      || || ||     || | ||| || |  | |   
GCATTAAATGGGCACTTTGATTGTGTACAACTGCTACTTGATCTTAATGCAAATGTGTCAGCTGCGACATTTCATTATGGTACATCAATGGATTTAATAGgt---agtcttttgtttaa----tttgctgacaaatgtatggttattttctttttttcttgaaaattac-----tgatgttcattgatatag---

upper sequence: AT5G07270.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA09G26560.1 (Glycine max), 5'ss of exon 5
GCCTTGAATGGATTATTTGATTGTGTGCAGCTTTTGCTTGATCTTGAGGCCAATGTTTCCGCTGTGACATTTCATTATGGAACATCAATGGATATGATTGgtctcagctttctatccgccttcttttttattgactaaaggattctttctatactgctcccaagatgacaatcttgttcttcgttaacgttgcag
|| || ||||| |  ||||||||||| || ||  | |||||||||   || ||||| || ||||  ||||||||||||||||||||||||||| | || |||   |   || | |           |||  |||| || | ||  ||  | | ||     |  ||  |  |   || | | | || |  | |   
GCATTAAATGGGTACTTTGATTGTGTACAACTGCTACTTGATCTTAGTGCTAATGTGTCAGCTGCAACATTTCATTATGGAACATCAATGGATTTAATAGgt---aatcttttgtttaa-------tttgctgacaaatgtatggttgttttcctttcttcttgaaaattac--tgatgtgcattgatatag---

upper sequence: AT5G07270.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA10G38270.1 (Glycine max), 5'ss of exon 5
GCCTTGAATGGATTATTTGATTGTGTGCAGCTTTTGCTTGATCTTGAGGCCAATGTTTCCGCTGTGACATTTCATTATGGAACATCAATGGATATGATTGgtctcagctttctatccgccttcttttttattgactaaaggattctttctatactgctcccaagatgacaatcttgttcttcgttaacgttgcag
||  | ||||| |  ||||||||||| || ||  ||||||||||| | || |||||    |||||||| | |||||||||||||||||||||| | || ||| |     |||| |    | |  |   |||   ||  ||| |  ||||       |   ||| || || ||  || | |    ||         
GCACTAAATGGGTACTTTGATTGTGTACAACTGCTGCTTGATCTTAATGCAAATGTGAATGCTGTGACTTATCATTATGGAACATCAATGGATTTAATAGgtat--atcttctgtttaacatgctaaatat---ctctaggttgttttccc-----ccttcaacataactattgtgatttgatgtag--------