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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATTCAATATTTTACGGTATGAACTTGGCCAAAAGTATGATTCCCACTATGATGTTTTCAACCCAACAGAATATGGACCACAATCAAGCCAAAGGgtaaaatccttaaatctgtcatatttatagctttctttagaacccgagacctcatttgaatttacgcag

Basic information

species Arabidopsis thaliana
transcript AT4G33910.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G33910.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv03s0091g00520.t01 (Vitis vinifera), 5'ss of exon 5
TCATTCAATATTTTACGGTATGAACTTGGCCAAAAGTATGATTCCCACTATGATGTTTTCAACCCAACAGAATATGGACCACAATCAAGCCAAAGGgtaa--aatccttaaatctgtcat----atttatagctttctttagaacccgagacctcatttgaatttacgcag----------------------------------------------------------------------------------------------------------------------------
 ||||||||||| | ||||||||  |||| || | |||| |||| || |||||||  ||||||||| | ||||||||||||||| ||||||||||||||   | |  | ||   | |  |       |     | |  | || | |       |   |||  |||||                                                                                                                                
GCATTCAATATTCTGCGGTATGAGATTGGGCAGAGGTATAATTCACATTATGATGCATTCAACCCAGCTGAATATGGACCACAAACAAGCCAAAGGgtacttactaatcaagcttttttttggagcatgatagtgtgctaagtaactacattttttcttgtctttactttcatgaatgactatagaaagtactgtataccttctattgctttgtattcctacatggagatcatgttctgcacaattagaaatgctttttgatgggtctatgatatattgtctgatgctattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86077701|gb|DR373458.1|DR373458
EST:     ACTATGATGTTTTCAACCCAACAGAATATGGACCACAATCAAGCCAAAGG                         ATTGCCTCCTTCCTGTTGTACTTATCTGATGTTGAAGAAGGCGGTGAAACC
genomic: ACTATGATGTTTTCAACCCAACAGAATATGGACCACAATCAAGCCAAAGGgtaaaatcct ... atttacgcagATTGCCTCCTTCCTGTTGTACTTATCTGATGTTGAAGAAGGCGGTGAAACC
EST: gi|86074577|gb|DR370334.1|DR370334
EST:     ACTATGATGTTTTCAACCCAACAGAATATGGACCACAATCAAGCCAAAGG                         ATTGCCTCCTTCCTGTTGTACTTATCTGATGTTGAAGAAGGCGGTGAAACC
genomic: ACTATGATGTTTTCAACCCAACAGAATATGGACCACAATCAAGCCAAAGGgtaaaatcct ... atttacgcagATTGCCTCCTTCCTGTTGTACTTATCTGATGTTGAAGAAGGCGGTGAAACC
EST: gi|86081200|gb|DR376957.1|DR376957
EST:     ACTATGATGTTTTCAACCCAACAGAATATGGACCACAATCAAGCCAAAGG                         ATTGCCTCCTTCCTGTTGTACTTATCTGATGTTGAAGAAGGCGGTGAAACC
genomic: ACTATGATGTTTTCAACCCAACAGAATATGGACCACAATCAAGCCAAAGGgtaaaatcct ... atttacgcagATTGCCTCCTTCCTGTTGTACTTATCTGATGTTGAAGAAGGCGGTGAAACC