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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAATGGGGGATGTTTCTGATCGTATAGGCCGACCGACAGACAATGGTCAGgtattgagttcagtagtactgcactgtatttttcatagtggctagatttgattttccttcttcagttgtatatgtgctatattgtaacggttatgtggcatgtttgagctgacttctcaatggacactgattttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G21100.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G21100.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G13680.1 (Glycine max), 5'ss of exon 5
GGCAATGGGGGATGTTTCTGATCGTATAGGCCGACCGACAGACAATGGTCAGgtatt-gagtt-cagtagtactgc--actgt---atttttcatagtggctagat----ttgattttccttcttcagttgtatatgtgctatattgtaacggttatgtggcatgt--ttgagctgacttc-----tcaatggacactgattttgcag
||||||||||||||||||||| || ||||| || || ||||| |||||||||||||| || ||    || | ||    ||||    |  ||| |||||    | ||    |   ||||  |  ||     || ||||   ||| | ||   || |  || | | ||  || |    | |||     | | |  |  ||  || |||||
GGCAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGTCAGgtatttgaattgttttacttctatctactgataaaactttgatagttataatattctttcagttttgatatttttaacgtttatgctttatctagtctaggatcagttgaaagttgttcaatgcatttcagctgttattccattctctttctgcag

upper sequence: AT4G21100.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA05G30530.1 (Glycine max), 5'ss of exon 5
GGCAATGGGGGATGTTTCTGATCGTATAGGCCGACCGACAGACAATGGTCAGgtattgagttcagtagtactgcactgtatttttcatagt-ggctagatttgattttccttcttcagttgtatatgtg----ctatattgtaacggttatgtggcatgtttga-gctgacttctcaatggacactgattttgcag-------------
||||||||||||||||||||| || ||||| || || ||||| ||||| ||||||||    |  ||  ||||    | || |  | | | | || ||| | |  | ||| |||     |  ||| | |      |||  | || |   | |  |    |||  | | ||     |  ||     ||| | || ||              
GGCAATGGGGGATGTTTCTGACCGGATAGGACGTCCCACAGATAATGGCCAGgtatttgaatt-gttttacttatatctactgataaaacttgggtagttatagtattctttcagttttgatatttttaacatttatgctttatctagtctaggatcagttgaaagttgttcaatgcatttcagctgttattccattttctttctgcag

upper sequence: AT4G21100.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv10s0003g04360.t01 (Vitis vinifera), 5'ss of exon 5
GGCAATGGGGGATGTTTCTGATCGTATAGGCCGACCGACAGACAATGGTCAGgtattgagttcagtagtactgcactgtatttt--tcat-agtggctagatttgattttccttcttcagttgtatatgtgctatattgtaacggttatgtggcatgtttgagctgacttctcaatggacactgattttgcag
 |||||||| ||||| || ||||||||||| || || ||||||||||| |||||||  | || | |       |  | ||||||  |||| |    ||   || |||||   || | |   | || ||    | | ||| |||   | || | ||||||  | |  |  | | |||   | ||   |    ||
AGCAATGGGAGATGTCTCAGATCGTATAGGTCGTCCTACAGACAATGGACAGgtatcaattttaatttatgctctttttattttgttcatgaactactgtgttggatttcaattatac---tctaaattattttttttgcaaccact-tg-gacatgtt--aacc-atgttttaattttctctt-ctccatag