1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATGGAAGCTTATATATGGCCACTCCAGTTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAGgtcactctatgatcctttgctcttctcaattcattatgtcctgtctgatttccatttctcagaaatgttgatagtgttcttaaattgtcgatctgtag
species | Arabidopsis thaliana |
transcript | AT4G20325.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAG AAGGGTGAAAATTCTGGAAAGTTCAGGCAACTAGATGAGATTTTATTCGTGEST: gi|116411163|gb|EG453755.1|EG453755
genomic: TTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAGgtcactctat ... cgatctgtagAAAGGTGAAAATTCTGGAAAGTTCAGGCAACTAGATGAGATTTTATTTGTG
EST: TTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAG AAAGGTGAAAATTCTGGAAAGTTCAGGCAACTAGATGAGATTTTATTTGTGEST: gi|116459202|gb|EG501794.1|EG501794
genomic: TTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAGgtcactctat ... cgatctgtagAAAGGTGAAAATTCTGGAAAGTTCAGGCAACTAGATGAGATTTTATTTGTG
EST: TTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAG AAAGGTGAAAATTCTGGAAAGTTCAGGCAACTAGATGAGATTTTATTTGTGEST: gi|116411162|gb|EG453754.1|EG453754
genomic: TTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAGgtcactctat ... cgatctgtagAAAGGTGAAAATTCTGGAAAGTTCAGGCAACTAGATGAGATTTTATTTGTG
EST: TTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAG AAGGGTGAAAATTCTGGAAAGTTCAGGCAACTAGATGAGATTTTATTTGTGEST: gi|116411166|gb|EG453758.1|EG453758
genomic: TTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAGgtcactctat ... cgatctgtagAAAGGTGAAAATTCTGGAAAGTTCAGGCAACTAGATGAGATTTTATTTGTG
EST: TTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAG AAAGGTGAAAATTCTGGAAAGTTCAGGCAACTAGATGAGATTTTATTTGTGEST: gi|116411176|gb|EG453768.1|EG453768
genomic: TTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAGgtcactctat ... cgatctgtagAAAGGTGAAAATTCTGGAAAGTTCAGGCAACTAGATGAGATTTTATTTGTG
EST: TTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAG AAAGGTGAAAATTCTGGAAAGTTCAGGCAACTAGATGAGATTTTATTTGTGEST: gi|116459198|gb|EG501790.1|EG501790
genomic: TTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAGgtcactctat ... cgatctgtagAAAGGTGAAAATTCTGGAAAGTTCAGGCAACTAGATGAGATTTTATTTGTG
EST: TTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAG AAAGGTGAAAATTCTGGAAAGTTCAGGCAACTAGATGAGATTTTATTTGTGEST: gi|116459190|gb|EG501782.1|EG501782
genomic: TTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAGgtcactctat ... cgatctgtagAAAGGTGAAAATTCTGGAAAGTTCAGGCAACTAGATGAGATTTTATTTGTG
EST: TAGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAG AAAGGTGAAAATTCTGGAAAGTTCAGGCAACTAGATGAGATTTTATTTGTGEST: gi|116411173|gb|EG453765.1|EG453765
genomic: TTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAGgtcactctat ... cgatctgtagAAAGGTGAAAATTCTGGAAAGTTCAGGCAACTAGATGAGATTTTATTTGTG
EST: TTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAG AAAGGTGAAAATTCTGGAAAGTTCAGGCAACTAGATGAGATTTTATTTGTGEST: gi|116411164|gb|EG453756.1|EG453756
genomic: TTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAGgtcactctat ... cgatctgtagAAAGGTGAAAATTCTGGAAAGTTCAGGCAACTAGATGAGATTTTATTTGTG
EST: TTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAG AAAGGTGAAAATTCTGGAAAGTTCAGGCAACTAGATGAGATTTTATTTGTG
genomic: TTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAGgtcactctat ... cgatctgtagAAAGGTGAAAATTCTGGAAAGTTCAGGCAACTAGATGAGATTTTATTTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGAAGCTTATATATGGCCACTCCAGTTGATCCTGTTTTCATATTGTTGCCTATTTTCGACGAAGCAAGAATGAAGgtcactctatgatcctttgctcttctcaattcattatgtcctgtctgatttccatttctcagaaatgttgatagtgttcttaaattgtcgatctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA