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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTACATTGGCTACAATGAGTCTGGAAGGCGAATAGATAGTACTTACATACAAGGTTCTCCTGCTAGAATCCGCATGGGAACCAATGCACTTGTTCCAGgcaagtagaagacattaacttggctctttagtagtaggatgttaatgaagaatcttctttgacaggaaacacatattgaagatttttaatactatatggataatgatgatgcag

Basic information

species Arabidopsis thaliana
transcript AT3G60370.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125035311|gb|EL107580.1|EL107580
EST:     ACAAGGTTCTCCTGCTAGAATCCGCATGGGAACCAATGCACTTGTTCCAG                         GATTTGAAATGGGAATTCGTGA
genomic: ACAAGGTTCTCCTGCTAGAATCCGCATGGGAACCAATGCACTTGTTCCAGgcaagtagaa ... gatgatgcagGATTTGAAATGGGAATTCGTGA
EST: gi|86070975|gb|DR366732.1|DR366732
EST:     ACAAGGTGCTCCTGCTAGAATCCGCATGGGAACCAATGCACTTGTTCCAG                         GATTTGAAATGGGAATTCGTGACATGAAGCCCGGTGGGCGAAGAAGGATTA
genomic: ACAAGGTTCTCCTGCTAGAATCCGCATGGGAACCAATGCACTTGTTCCAGgcaagtagaa ... gatgatgcagGATTTGAAATGGGAATTCGTGACATGAAGCCCGGTGGGCGAAGAAGGATTA
EST: gi|19741670|gb|AU227023.1|AU227023
EST:     CACTTGTTCCA-                         GATTTTAAATGGGGATTCGTGACATGAAGCCCGGTGGGCGAAGAAGGATTA
genomic: CACTTGTTCCAGgcaagtagaa ... gatgatgcagGATTTGAAATGGGAATTCGTGACATGAAGCCCGGTGGGCGAAGAAGGATTA
EST: gi|86070976|gb|DR366733.1|DR366733
EST:     CAAGGTTCTCCTGCTAGAATCCCGCATGGGAACCA-TGCACTTGTTCCAG                         GATT-GAAATGGGAATTCGNGACATGAAGCCCGGTGGGCGAA
genomic: CAAGGTTCTCCTGCTAGAATCC-GCATGGGAACCAATGCACTTGTTCCAGgcaagtagaa ... gatgatgcagGATTTGAAATGGGAATTCGTGACATGAAGCCCGGTGGGCGAA
EST: gi|19875360|gb|AU236191.1|AU236191
EST:     ACAAGGTTCTCCTGCTAGAATCCGCATGGGAACCAATGCACTTGTTCCAG                         GATTTGAA-TGGGGATTCGNGACATGAAGCCCGGNGGGCGAAGAAGGATTA
genomic: ACAAGGTTCTCCTGCTAGAATCCGCATGGGAACCAATGCACTTGTTCCAGgcaagtagaa ... gatgatgcagGATTTGAAATGGGAATTCGTGACATGAAGCCCGGTGGGCGAAGAAGGATTA