1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TGTTGAGGCAGAGCTAGTTGTTGATGGAGTAAGCTGGAATGTGACGTGTGTTAGTATGGGCAATCCTCACTGTATCACATTTGGTAAAAAGGGTGGACCGgtgcgtgtttcgttactagacttctaatcatattatttgtctacacgtgaatttcttatcatttgtaattttggtttgtgtcaaccag
species | Arabidopsis thaliana |
transcript | AT3G53580.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTAGTATGGGCAATCCTCACTGTATCACATTTGGTAAAAAGGGTGGACCG AATCTGAAAGTTGATGATTTGAACTTACCAGAGATTGGTCCAAAGEST: gi|125294517|gb|EL308602.1|EL308602
genomic: TTAGTATGGGCAATCCTCACTGTATCACATTTGGTAAAAAGGGTGGACCGgtgcgtgttt ... tgtcaaccagAATCTGAAAGTTGATGATTTGAACTTACCAGAGATTGGTCCAAAG
EST: TTAGTATGGGCAATCCTCACTGTATCACATTTGGTAAAAAGGGTGGACCG AATCTGAAAGTTGATGATTTGAACTTACCAGAEST: gi|164220713|gb|EL970282.1|EL970282
genomic: TTAGTATGGGCAATCCTCACTGTATCACATTTGGTAAAAAGGGTGGACCGgtgcgtgttt ... tgtcaaccagAATCTGAAAGTTGATGATTTGAACTTACCAGA
EST: TTTGGT-AAAAGGGTGGACCG AATCTGAAAGTTGATGATTTGAACTTACCAGAGATTGGTCCAAAGTTCGAGEST: gi|164211459|gb|ES159907.1|ES159907
genomic: TTTGGTAAAAAGGGTGGACCGgtgcgtgttt ... tgtcaaccagAATCTGAAAGTTGATGATTTGAACTTACCAGAGATTGGTCCAAAGTTCGAG
EST: TTAGTATGGGCAATCCTCACTGTATCACATTTGGTAAAA-GGGTGGGCCG AATCTGAAAGTTGATGATTEST: gi|125108273|gb|EL161271.1|EL161271
genomic: TTAGTATGGGCAATCCTCACTGTATCACATTTGGTAAAAAGGGTGGACCGgtgcgtgttt ... tgtcaaccagAATCTGAAAGTTGATGATT
EST: TGGGCAATCCTCACTGTATCACATTTGGTAAAAAGGGTGGACCG AATCTGAAAGTTGATGATTTGAACTTACCAGAGATTGGTCCAAAGTTCGAGEST: gi|86082085|gb|DR377844.1|DR377844
genomic: TGGGCAATCCTCACTGTATCACATTTGGTAAAAAGGGTGGACCGgtgcgtgttt ... tgtcaaccagAATCTGAAAGTTGATGATTTGAACTTACCAGAGATTGGTCCAAAGTTCGAG
EST: TTAGTATGGGCAATCCTCACTGTATCACATTTGGTAAAAAGGGTGGACCG AATCTGAAAGTTGATGATTTGAACTTACCAGAGATTGGTCCAAAGTTCGAGEST: gi|86080834|gb|DR376591.1|DR376591
genomic: TTAGTATGGGCAATCCTCACTGTATCACATTTGGTAAAAAGGGTGGACCGgtgcgtgttt ... tgtcaaccagAATCTGAAAGTTGATGATTTGAACTTACCAGAGATTGGTCCAAAGTTCGAG
EST: TTAGTATGGGCAATCCTCACTGTATCACATTTGGTAAAAAGGGTGGACCG AATCTGAAAGTTGATGATTTGAACTTACCAGAGATTGGTCCAAAGTTCGAGEST: gi|86033409|gb|DR329162.1|DR329162
genomic: TTAGTATGGGCAATCCTCACTGTATCACATTTGGTAAAAAGGGTGGACCGgtgcgtgttt ... tgtcaaccagAATCTGAAAGTTGATGATTTGAACTTACCAGAGATTGGTCCAAAGTTCGAG
EST: TTAGTATGGGCAATCCTCACTGTATCACATTTGGTAAAAAGGGTGGACCG AATCTGAAAGTTGATGATTTGAACTTACCAGAGATTGGTCCAAAGTTCGAGEST: gi|86078439|gb|DR374196.1|DR374196
genomic: TTAGTATGGGCAATCCTCACTGTATCACATTTGGTAAAAAGGGTGGACCGgtgcgtgttt ... tgtcaaccagAATCTGAAAGTTGATGATTTGAACTTACCAGAGATTGGTCCAAAGTTCGAG
EST: TTAGTATGGGCAATCCTCACTGTATCACATTTGGTAAAAAGGGTGGACCG AATCTGAAAGTTGATGATTTGAACTTACCAGAGATTGGTCCAAAGTTCGAGEST: gi|116478499|gb|EG521091.1|EG521091
genomic: TTAGTATGGGCAATCCTCACTGTATCACATTTGGTAAAAAGGGTGGACCGgtgcgtgttt ... tgtcaaccagAATCTGAAAGTTGATGATTTGAACTTACCAGAGATTGGTCCAAAGTTCGAG
EST: TTAGTATGGGCAATCCTCACTGTATCACATTTGGTAAAAAGGGTGGACCG AATCTGAAAGTTGATGATTTGAACTTACCAGAGATTGGTCCAAAGTTCGAGEST: gi|116478497|gb|EG521089.1|EG521089
genomic: TTAGTATGGGCAATCCTCACTGTATCACATTTGGTAAAAAGGGTGGACCGgtgcgtgttt ... tgtcaaccagAATCTGAAAGTTGATGATTTGAACTTACCAGAGATTGGTCCAAAGTTCGAG
EST: TTAGTATGGGCAATCCTCACTGTATCACATTTGGTAAAAAGGGTGGACCG AATCTGAAAGTTGATGATTTGAACTTACCAGAGATTGGTCCAAAGTTCGAG
genomic: TTAGTATGGGCAATCCTCACTGTATCACATTTGGTAAAAAGGGTGGACCGgtgcgtgttt ... tgtcaaccagAATCTGAAAGTTGATGATTTGAACTTACCAGAGATTGGTCCAAAGTTCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTGAGGCAGAGCTAGTTGTTGATGGAGTAAGCTGGAATGTGACGTGTGTTAGTATGGGCAATCCTCACTGTATCACATTTGGTAAAAAGGGTGGACCGgtgcgtgtttcgttactagacttctaatcatattatttgtctacacgtgaatttcttatcatttgtaattttggtttgtgtcaaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA