Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTGGAATTCCCGAGGGACATAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATATATGGTTCCGTAATTACCAGgtaagttgaaattttagcatctctcatgctctcatttcatttcagtttggaaacgtttcgtttaactagccaaggcttccattgcag

Basic information

species Arabidopsis thaliana
transcript AT3G15460.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G15460.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os02g37870.1 (Oryza sativa), 5'ss of exon 5
TTTTGGAATTCCCGAGGGACATAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATATATGGTTCCGTAATTACCAGgtaagttgaaattttagcatctctcatgctctcatttcatttcagt---ttggaaacgtttcgtttaactagccaaggcttc-cattgcag------------------
 ||||  | |||  | |  ||| | ||| | || ||||  ||||||||||||||||| ||||| || |||||||||||| | |||||  | ||||| |||||||  |   | | |      | || |  | |   || | | | |    ||  || |  |     |  |||||   | ||    ||| | |                  
ATTTGCTACTCCAAAAGATCATCGAAAGGCAAAGCCTTTTCATGACCATGTGTTTGTCTTCTCTATCGTTGATGACCATGTTTGGTTTAGAAATTATCAGgtaatatattagtctgtttgttttcttaattttcattaactcctgccagttacaagcaatagaagttcctagcattgtctgaatattaccgtatgatcaactttgtcag

upper sequence: AT3G15460.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G160458_T01 (Zea mays), 5'ss of exon 5
TTTTGGAATTCCCGAGGGACATAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATATATGGTTCCGTAATTACCAGgtaagttgaaattttagcatctctcatgctctcatttcatttcagtttggaaacgtttcgttta---actagccaaggcttccattgcag--------------------------------
 ||||  | |||  | |  ||  | ||  | ||||||| |||||||||||||||||| ||||||||||| |||| |||| | ||||| || || |||||||| |  |   || |   ||| | |||   |    |||  |||   || ||     ||| || |     | |  |||   |    |   ||                                
ATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCATGTGTTTGTCTTCTCCATTGTGGATGGCCATGTTTGGTTTCGAAACTACCAGgtgatct---atctctccatttgtcagattgaatttttgtttggattaggttcatttttgtgtgtgcgcaatgcaaacatcatgtcttagcaccattgaattttagaaacctaatttggcag

upper sequence: AT3G15460.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G168176_T01 (Zea mays), 5'ss of exon 5
TTTTGGAATTCCCGAGGGACATAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATATATGGTTCCGTAATTACCAGgtaagttgaaattttagcatctctcatgctctcatttcatttcagtttggaaacgtttcgtttaactagccaaggcttccattgcag-------------------------------------
 ||||  | |||  | |  ||  | ||  | ||||||| |||||||||||| ||||| ||||||||||| |||| |||| | ||||| || || |||||||| |  |     | |  ||| | |||   |    ||| ||||   || ||     |||  ||   | |  ||| | |    |   ||                                     
ATTTGCTACTCCTAAAGATCACCGTAAAGCAAAACCTTTCCATGACCATGTATTTGTCTTCTCCATTGTGGATGGCCATGTTTGGTTTCGAAACTACCAGgtgatcta----tctcccatttttcagaatgaatttttatttggattaggttcattttttttgtgcaatgcaaagttcatgtcttagcaccatttgaattttagaaaccaacttattttgacag

upper sequence: AT3G15460.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA18G51310.1 (Glycine max), 5'ss of exon 5
TTTTGGAATTCCCGAGGGACATAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATATATGGTTCCGTAATTACCAGgtaa------gttgaaattttagcatctctcatgctctcatttcatttcagtttgga--aacgtttcgtt-taactagccaaggcttccattgcag----
 |||| ||  ||  |||  || || ||| |||| |||| |||||| || || ||||||||||| || ||||||||||||||||||||||| |||||||||||        ||| |   ||||     | || |   |  ||| ||||    | ||||  ||  | | |   |   | |    ||| |||| | ||     
ATTTGAAACACCAAAGGACCACAGAAAGGCTAAGCCTTTCCATGATCACGTTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTACCAGgtttatatttgtttagtatttaaagaatgtccttaacctattgcattaatttatggattaaaatctggagatttgttgttttggcatccaatccaactac

upper sequence: AT3G15460.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G28320.2 (Glycine max), 5'ss of exon 6
TTTTGGAATTCCCGAGGGACATAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATATATGGTTCCGTAATTACCAGgtaagttgaaattttagcatctctcatgctctcatttcatttcagtttggaaacgtttc---gtttaactagccaaggcttccattgcag----------
 |||| ||  ||  |||  || || ||| | || |||| |||||| || || ||||||||||| || ||||||||||||||||||||||| ||||| |||||  || |   | || |  |     ||        |   || |   ||| |    |||    |||  | ||  ||    |    ||   |          
ATTTGAAACACCAAAGGACCACAGAAAGGCCAAGCCTTTCCATGATCACGTTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTCCGGAATTATCAGgtttgtggttgtatttgtttaatatataaagaatgtctgttacctattgcattaatttacaggttataatatgcagatttgttgttttggaatccattcc

upper sequence: AT3G15460.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G12700.1 (Glycine max), 5'ss of exon 6
TTTTGGAATTCCCGAGGGACATAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATATATGGTTCCGTAATTACCAGgtaagttgaaat-tttagcatct-ctcatgctctcatttcatttcagtttggaaacgtttcgtttaact---agccaaggcttccattgcag---------
 |||| ||  ||  |||  |  || | | |||| || | |||||| || || ||||||||||| || |||||||||||||||||||| || |||||||||||  ||     | ||| |||| | | || | | | |    || ||  | || |    || | | |  |    |   |  | ||  | | |||         
ATTTGAAACACCAAAGGACCTAAGAAGGACTAAGCCATTCCATGATCACGTTTTTGTTTTCTCAATAGTTGATGACCATATATGGTTTCGGAATTACCAGgtttgtgtttgtatttggcatttgcacaagatgtaaaga-atatccatatgcatcatttacctattgcgttaatttagaggttgaaatccagagatttgtt

upper sequence: AT3G15460.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv07s0005g04550.t01 (Vitis vinifera), 5'ss of exon 5
TTTTGGAATTCCCGAGGGACATAGGAAGTCTAAACCTTACCATGACCATGTGTTTGTTTTCTCCATTGTTGATGACCATATATGGTTCCGTAATTACCAGgta-----agttgaaattttagcatctctcat----gctctcatttcatttcagtttggaaacgtttcgttt-aactagccaaggcttccattgcag---
 ||||||| |||  |||  || |||||  |||||||||| ||||| ||||| |||| ||||||  ||| |||||| |||||||||||||| || ||||||||      |||| |||| ||    | | | ||      ||  | |  | |||   ||| |    ||   ||| |  ||    | |    ||||| |    
ATTTGGAACTCCGAAGGAGCACAGGAAAGCTAAACCTTATCATGATCATGTCTTTGCTTTCTCACTTGCTGATGATCATATATGGTTCCGGAACTACCAGgttcgtgtagttcaaatcttcatctttgtgatttagattcatagtgtaattctaattgcatgtcttatattttaggtaaaataaggaggcattgaaataa