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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTTTAAGCCTTGGTGGAACAATGCTCGGGTTCTACCCGGTGAGGGTCTTACCCTCAAAAACTGCCATCCTACCAGTGAATCCCACATTTCTTCCAAGGgtaaatgctcaaatgttcctctgaagttccactaatcaattttggttttaagttttgagttttttcaatcttactttgacatcttctatgttgtggttaattcag

Basic information

species Arabidopsis thaliana
transcript AT3G14450.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G14450.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv19s0176g00140.t01 (Vitis vinifera), 5'ss of exon 5
AGCTTTAAGCCTTGGTGGAACAATGCTCGGGTTCTACCCGGTGAGGGTCTTACCCTCAAAAACTGCCATCCTACCAGTGAATCCCACATTTCTTCCAAGGgta--aatgctcaaatgttcctctga---agttccactaatca----attttggtttta----agttttgagttttttcaatcttactttgacatcttctatgt---tgtggtt-aattcag---------------------------------------------------
||| |||| ||||||||| |||||||| || | ||| || || ||||||||||| ||||| ||||| ||||| || |||||||| ||||| || || ||||||  | ||  ||| | ||   |||    ||||    ||||      ||| |  |||||    |  ||||     ||| | |     ||  |  | | || ||    |||||||  ||||                                                     
AGCATTAAACCTTGGTGGGACAATGCTAGGTTACTATCCAGTTAGGGTCTTACCTTCAAAGACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCCAGGgtactagtggccaactttttagctgttttagttatgttaatttctgtattatacttttattacatgtttggcccattttagtgagcattccatttttgctctgcccctgtggtttgattctcactccgtataattttttattttattttatatatgattgtaatcaaatgcag