Sequence
atgc intronic sequence ATGC exonic sequenceGAGATGATGGATCTGATGGATGTTAGTTCTGAAATTCAAGAATCACTTGGTAGGAGCTACAATATTCCTGATGGCCTTGACGAGGATGACCTCATGGGAGgtaaagtgcttgttttgtaattggaagtttaagatcaatcgcttgctacgctatgcgtctctcatatcatttacattcttttgatatatttcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G10640.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G10640.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G092468_T02 (Zea mays), 5'ss of exon 5
GAGATGATGGATCTGATGGATGTTAGTTCTGAAATTCAAGAATCACTTGGTAGGAGCTACAATATTCCTGATGGCCTTGACGAGGATGACCTCATGGGAGgtaaagtgc--ttgttttgtaattggaagtt---taagat-----caatcgcttgctacgc-tatgcgtctctcatatcatttacattcttttgatatatttcag----------------------------------------------------------
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GAGATGATGGATCTTATGGATGTGAGCACTGAAATACAAGAAACTCTTGGCAGAAGCTACAACGTCCCAGATGACATCGATGAGGAAGAACTTATGGGGGgtacggttcaactatcctgacactttgatttctcttggatatttgcaaacgctatatatatatatatatttttcaaaccgcatacattgctacaaagcttatgaaggagcaaaaactcctttatctctctgctgtccctcattttgtttcttggaaaatgcag
upper sequence: AT3G10640.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA10G33960.1 (Glycine max), 5'ss of exon 5
GAGATGATGGATCTGATGGATGTTAGTTCTGAAATTCAAGAATCACTTGGTAGGAGCTACAATATTCCTGATGGCCTTGACGAGGATGACCTCATGGGAGgtaaagtgcttgttttgtaattggaagtttaagatcaatcgcttgcta-cgctatgcgtctctcatatcatttacattcttttgatatatttcag----------------------------------------------------------------------------------------------------
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GAGATGATGGACCTCATGGATGTAAGTAATGAAATTCAAGAGACTTTGGGTAGAAGCTATAATGTGCCTGATGACATTGACGAGGATGATCTTATGGGTGgtatgttaaaaatttggtta--ggaagcttgagat-atttgttggaaatcattttcaaaaactcctagc--taacatggctccatagttgggcagggtagtgggattttgtggctgtgatgaaaattgttttttgttgttgtcatgaagcggtttgaatgacatgtttctttattttttggttttggtaaaacag
upper sequence: AT3G10640.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv08s0007g02300.t01 (Vitis vinifera), 5'ss of exon 5
GAGATGATGGATCTGATGGATGTTAGTTCTGAAATTCAAGAATCACTTGGTAGGAGCTACAATATTCCTGATGGCCTTGACGAGGATGACCTCATGGGAGgtaaagtgcttgttttgtaattggaagtttaagatcaatcgcttgctacgctatgcgtctctcatatcatttacattcttttgatatatttcag-----------------------------------------------------------------------------
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GAGATGATGGACCTGATGGATGTAAGCTCAGAAATTCAAGAATCCCTTGGCAGAAGTTACAATGTGCCAGATGACATTGATGAGGATGACCTCATGGGCGgta---tgcttaaattgtattcatatgtcatggaactttggaatgg-atgctaagagaatgttgcattttcttcagtatccttgcttgtcacgagggtcagcaaagggttctccccccttcttttaattttatagatttattgttttatgtccctcttttttcccctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19741575|gb|AU226928.1|AU226928EST: TAGGAGCTACAATATTCCTGATGGCCTTGACGAGGATGACCTCATGGGAG AGCTTGATGCTCTTGAAGCTGACATGGGAAACGAGACCGAAGCAGATGGAA
genomic: TAGGAGCTACAATATTCCTGATGGCCTTGACGAGGATGACCTCATGGGAGgtaaagtgct ... tatatttcagAGCTTGATGCTCTTGAAGCTGACATGGGAAACGAGACCGAAGCAGATGGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGATGATGGATCTGATGGATGTTAGTTCTGAAATTCAAGAATCACTTGGTAGGAGCTACAATATTCCTGATGGCCTTGACGAGGATGACCTCATGGGAGgtaaagtgcttgttttgtaattggaagtttaagatcaatcgcttgctacgctatgcgtctctcatatcatttacattcttttgatatatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG