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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTAGGATCTCGCCGTGTAAAAGCAGTTGCGGCAGCTAAGCACCACACTGTTATTGCTACAGAAGGCGGGGATGTGTACACATGGGGTTCCAATAGAGgtaaaacacttaaacggcttcctatatttcaggaatggatctttagtgctatagtatactcaagttttagtttcgacctctaagcccagtttcttagttaatctgaattagatggaaatatattcaatctatttgggtcacctcgtggtcttttatcttagagtctgatgttgtttgtgatgctcttgtag

Basic information

species Arabidopsis thaliana
transcript AT3G03790.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G03790.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA16G04300.1 (Glycine max), 5'ss of exon 4
GGTTTAGGATCTCGCCGTGTAAAAGCAGTTGCGGCAGCTAAGCACCACACTGTTATTGCTACAGAAGGCGGGGATGTGTACACATGGGGTTCCAATAGAGgtaaaacacttaaacggcttcctatatttcaggaatggatctttag---tgctatagtatact-caagttttagtttcgacctctaagcccagtttcttagttaatctgaattagatggaaatatattcaatctatttgggtcacctcgtggtcttttatcttagagtctgatgttgtttgtgatgctcttgtag
||| | || || ||| | || |  ||| |||| ||||||||||| || || |||||| ||||  | || ||||| |||| ||| ||||| |||||||||||||||||      |        | | | | ||   ||  ||||  |   || ||  ||| ||| |     | | || | | |    |  |   |  | |                                                                                                
GGTCTGGGTTCCCGCAGAGTGATGGCAATTGCTGCAGCTAAGCATCATACGGTTATTTCTACCCAGGGTGGGGAAGTGTTCACCTGGGGATCCAATAGAGgtaaaacttgacgatattcatgtttgtataagttgtgagtcttgtgagttgttactgtaaactacttaactaaattgcaatcaaataatcttttcccctg-----------------------------------------------------------------------------------------------

upper sequence: AT3G03790.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA19G29100.1 (Glycine max), 5'ss of exon 4
GGTTTAGGATCTCGCCGTGTAAAAGCAGTTGCGGCAGCTAAGCACCACACTGTTATTGCTACAGAAGGCGGGGATGTGTACACATGGGGTTCCAATAGAGgtaaaacacttaaacggcttcctatatttcaggaatggatctttagtgctat-agtatactcaagttttagtttcgacctctaagcccagtttcttagttaatctgaattagatggaaatatattcaatctatttgggtcacctcgtggtcttttatcttagagtctgatgttgtttgtgatgctcttgtag
||| | || || ||| | || |  ||| |||  ||||||||||| || |  |||||||||||  | || ||||| |||| ||| ||||| |||||||||||||||||     ||        | | | | ||   ||  ||||  | | | | | | ||  | |   |   || | | |    |  |   |  | |   |                                                                                            
GGTCTGGGTTCCCGCAGAGTGATGGCAATTGGTGCAGCTAAGCATCATATGGTTATTGCTACCCAGGGTGGGGAAGTGTTCACTTGGGGATCCAATAGAGgtaaaacttgacaatattcatgtttgtataagttgtgagtcttgtgagttgttactgtaaactacactggattgcaatcaaataatcttttcccctgcat--------------------------------------------------------------------------------------------

upper sequence: AT3G03790.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv08s0032g00280.t01 (Vitis vinifera), 5'ss of exon 6
GGTTTAGGATCTCGCCGTGTAAAAGCAGTTGCGGCAGCTAAGCACCACACTGTTATTGCTACAGAAGGCGGGGATGTGTACACATGGGGTTCCAATAGAGgtaaaacacttaaacggcttcctatatttcaggaatggatctttagtgctatagtatactcaagttttagtttcgacctctaagcccagtttcttagttaatctgaattagatggaaatatattcaatctatttgggtcacctcgtggtcttttatcttagagtctgatgttgtttgtgatgctcttgtag
|||||||| || ||||| ||||| ||| |||| |||||||| || ||||||||| |||| ||||| || ||||| |||| ||| ||||| ||||||||||||||| |  |||   ||  |  || | |  | |    ||  || |||     | |  | ||||   || |||  ||    | |  |||| |   | |   || | |                                                                                     
GGTTTAGGTTCACGCCGGGTAAAGGCAATTGCAGCAGCTAAACATCACACTGTTGTTGCAACAGAGGGTGGGGAAGTGTTCACTTGGGGATCCAATAGAGgtaaa-cttttagcgggtattttagact--aagttctgaatttgagtttgccaatccaatcaa---ttggttatgattgttgaatccagctctgttggccatatta-------------------------------------------------------------------------------------