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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTTCTATTTACATCAAGCCGCGAAGACTCAGACTTGAAACTTATTGATTTTGGTCTCTCAGACTTTATTAGACCTGgtaagacttttcattctttcaggccttgtcactatactttccttatagctgcctactagtgaaatttgattgaattcctcaatgcag

Basic information

species Arabidopsis thaliana
transcript AT2G46700.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G46700.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G031893_T01 (Zea mays), 5'ss of exon 5
AATTTTCTATTTACATCAAGCCGCGAAGACTCAGACTTGAAACTTATTGATTTTGGTCTCTCAGACTTTATTAGACCTGgtaagacttttcattctttcagg-ccttgtcactatactttccttatagctgcctactagtgaaatttgattga-attcctcaatgcag------------------------------------------------------------------
|||||  |||| |   | ||    ||  | ||     ||||  | |||||||||||||||||||| ||||| ||||| ||||  || |  |        ||| || |   | | ||   | ||  |       || |  |  || |  ||||| ||      |  ||                                                                   
AATTTCTTATTCAGCACTAGGGAAGAGCATTCTCCTATGAAGATAATTGATTTTGGTCTCTCAGATTTTATAAGACCAGgtattacatacctccgcacaagggccatccaattgtaaagttctgttttacaaata-tgttagaagtccattgacataaaatgaaacatgatatgaccttcctccaaaaaatgttctaacgcctgatgctcctgatgccttttccccctttacag

upper sequence: AT2G46700.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G100560_T01 (Zea mays), 5'ss of exon 5
AATTTTCTATTTACATCAAGCCGCGAAGACTCAGACTTGAAACTTATTGATTTTGGTCTCTCAGACTTTATTAGACCTGgtaagacttttcattctttcagg-ccttgtcactata----ctttccttatagctgc-ctactagtgaaatttgattgaattcctcaatgcag-------------------------------------------------------------
||||| || ||||   | ||    ||  | ||     ||||  | |||||||||||||||||||| ||||| ||||| ||||  || |  |        ||| || |   | | ||      |   ||| |  |    ||  |||  | |   ||  |||    ||    |                                                              
AATTTCCTGTTTAGCACTAGGGAAGAGCATTCTCCTATGAAGATAATTGATTTTGGTCTCTCAGATTTTATAAGACCAGgtattacatacctccacacaagggccatccaattgtaaagttctgttttacaaatatgttagaagtccattgccataaaatgaaacatgatatgaccttcctccaaaaaatgttctaatgcctgatgctcctgatgctttttccccctttacag

upper sequence: AT2G46700.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G138245_T01 (Zea mays), 5'ss of exon 5
AATTTTCTATTTACATCAAGCCGCGAAGACTCAGACTTGAAACTTATTGATTTTGGTCTCTCAGACTTTATTAGACCTGgtaagacttttcattctttcaggccttgtcactatactttccttatagctgcctactagtgaaatttgattgaattcc-tcaatgcag---------------------------------------------------------------------------
||||| ||||| |   | ||    ||  | ||     ||||  | |||||||||||||||||||| ||||| ||||| ||||     || ||| | | ||  |   |  |  || | ||||| || |    ||| |    |||| || | ||| ||| |  |   |                                                                            
AATTTCCTATTCAGCACGAGGGAAGAGCATTCTCCTATGAAGATAATTGATTTTGGTCTCTCAGATTTTATAAGACCAGgta-----ttacatacctccacacaagg--atcatccattcctaatggagttctattttacaaatatgttagaagtccattgacataaaacgaaacatgatatgagcttcctctaaaagatgttttaaagcctgatgctcctgatgcctcctccccctcacag

upper sequence: AT2G46700.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv15s0048g02840.t01 (Vitis vinifera), 5'ss of exon 5
AATTTTCTATTTACATCAAGCCGCGAAGACTCAGACTTGAAACTTATTGATTTTGGTCTCTCAGACTTTATTAGACCTGgtaagactt-------ttcattctttcaggccttgtcactatactttccttatagctgcctactagtgaaatttgattgaattcc-tcaatgcag-----
||||| || ||||| |||||  | |||||  | ||  |||| ||||||||||||||||| || |||||||||||||| |||||   ||        ||| | ||| |    |  |   |  ||| |      |  | | ||    | | |  | | |  | |   | |||  ||     
AATTTCCTTTTTACCTCAAGAAGTGAAGATGCTGATATGAAGCTTATTGATTTTGGTCTTTCTGACTTTATTAGACCAGgtaatgtttaactatactcaatttttgatctataatttgtccactatttaacaaaattcttatcctttataaataactatacttgatgaatttagataat